Cagra.7149s0001 (Capsella grandiflora)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cagra.7149s0001 T196443_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.593 1.000
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.593 1.000
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.7149s0001.1.p GATA 95 114

Links

Other GATA family TFs
Other Capsella grandiflora TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSDNOG00000042007 Dasypus novemcinctus ENSDNOG00000042007 N 0.000