Carubv10014665m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10014665m.g T196458_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.823 0.778
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.803 0.778
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.803 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10014665m GATA 56 91

Links

Other GATA family TFs
Other Capsella rubella TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB00088.1 Alternaria brassicicola AB00088.1 N
COCC4DRAFT_87358 Bipolaris maydis COCC4DRAFT_87358 N
COCMIDRAFT_81530 Bipolaris oryzae COCMIDRAFT_81530 N
COCSADRAFT_105936 Bipolaris sorokiniana COCSADRAFT_105936 N
COCVIDRAFT_32721 Bipolaris victoriae COCVIDRAFT_32721 N
COCCADRAFT_90976 Bipolaris zeicola COCCADRAFT_90976 N
CHGG_09798 Chaetomium globosum CHGG_09798 N
CTHT_0017920 Chaetomium thermophilum CTHT_0017920 N
gw1.2.32.1 Cochliobolus heterostrophus C5 gw1.2.32.1 N
CH063_03657 Colletotrichum higginsianum CH063_03657 N
FFUJ_01581 Fusarium fujikuroi FFUJ_01581 N
FGRRES_01378 Fusarium graminearum FGRRES_01378 N
FPSE_11552 Fusarium pseudograminearum FPSE_11552 N
NechaG74381 Fusarium solani NechaG74381 N
fgenesh1_pg.sca_8_chr1_1_0000412 Nectria haematococca fgenesh1_pg.sca_8_chr1_1_0000412 N
UCRNP2_4782 Neofusicoccum parvum UCRNP2_4782 N
col-25 Neurospora crassa NCU06068 N
OIDMADRAFT_74239 Oidiodendron maius OIDMADRAFT_74239 N
F503_03119 Ophiostoma piceae uamh F503_03119 N
PFICI_13726 Pestalotiopsis fici PFICI_13726 N
PODANS_5_4070 Podospora anserina PODANS_5_4070 N
MYCFIDRAFT_158158 Pseudocercospora fijiensis MYCFIDRAFT_158158 N
PTT_13765 Pyrenophora teres PTT_13765 N
PTRG_10286 Pyrenophora triticirepentis PTRG_10286 N
SETTUDRAFT_87447 Setosphaeria turcica SETTUDRAFT_87447 N
SMAC_07447 Sordaria macrospora SMAC_07447 N
SPBR_06366 Sporothrix brasiliensis SPBR_06366 N
HMPREF1624_07083 Sporothrix schenckii HMPREF1624_07083 N
SNOG_09876 Stagonospora nodorum SNOG_09876 N
PV09_00164 Verruconis gallopava PV09_00164 N
VDBG_03963 Verticillium albo atrum VDBG_03963 N
VDBG_03963 Verticillium alfalfae VDBG_03963 N
VDAG_01189 Verticillium dahliae VDAG_01189 N