gene04797-v1.0-hybrid (Fragaria vesca)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 gene04797-v1.0-hybrid T196562_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.867 1.000
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.867 1.000
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.851 0.917
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.847 0.889
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.847 0.889
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.847 0.889
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.843 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.843 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.837 0.861
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.837 0.861
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.837 0.861
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.833 0.778
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.832 0.806
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.832 0.806
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.830 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.819 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.819 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna04797.1-v1.0-hybrid GATA 134 169

Links

Other GATA family TFs
Other Fragaria vesca TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000019654 Ailuropoda melanoleuca ENSAMEG00000019654 I
ENSBTAP00000004465-D1 Bos grunniens ENSBTAP00000004465-D1 I
ZBTB43 Bos taurus ENSBTAG00000003438 I
ZBTB43 Callithrix jacchus ENSCJAG00000017939 I
Aan_R008070 Calypte anna Aan_R008070 I
ENSCSAG00000019711 Chlorocebus sabaeus ENSCSAG00000019711 I
ENSDORG00000001810 Dipodomys ordii ENSDORG00000001810 I
ZBTB43 Echinops telfairi ENSETEG00000000019 I
ZBTB43 Equus caballus ENSECAG00000013239 I
ZBTB43 Erinaceus europaeus ENSEEUG00000009258 I
ZBTB43 Felis catus ENSFCAG00000031874 I
ZBTB43 Gorilla gorilla ENSGGOG00000017180 I
ZBTB43 Homo sapiens ENSG00000169155 D
ENSSTOG00000007435 Ictidomys tridecemlineatus ENSSTOG00000007435 I
ZBTB43 Loxodonta africana ENSLAFG00000011314 I
ENSP00000362556 Macaca fascicularis ENSP00000362556 I
ZBTB43 Macaca mulatta ENSMMUG00000013640 I
ENSMPUG00000019227 Mustela putorius furo ENSMPUG00000019227 I
Zbtb43 Mus musculus ENSMUSG00000026788 I
ZBTB43 Myotis lucifugus ENSMLUG00000010893 I
ENSNLEG00000017415 Nomascus leucogenys ENSNLEG00000017415 I
ZBTB43 Ochotona princeps ENSOPRG00000011453 I
ZBTB43 Oryctolagus cuniculus ENSOCUG00000009799 I
ZBTB43 Otolemur garnettii ENSOGAG00000002029 I
ENSOARG00000012600 Ovis aries ENSOARG00000012600 I
ZBTB43 Pan troglodytes ENSPTRG00000021378 I
ENSPANG00000000295 Papio anubis ENSPANG00000000295 I
ENSPPYG00000019615 Pongo abelii ENSPPYG00000019615 I
ZBTB43 Procavia capensis ENSPCAG00000006897 I
ZBTB43 Pteropus vampyrus ENSPVAG00000017706 I
Zbtb43 Rattus norvegicus ENSRNOG00000017017 I
ZBTB43 Sorex araneus ENSSARG00000013849 I
ENSSSCG00000029288 Sus scrofa ENSSSCG00000029288 I
ZBTB43 Tursiops truncatus ENSTTRG00000009614 I