gene23279-v1.0-hybrid (Fragaria vesca)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 gene23279-v1.0-hybrid T196572_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.867 0.972
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.848 0.917
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.847 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.847 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.861
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.861
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.861
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.861
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.750
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna23279.1-v1.0-hybrid GATA 252 287

Links

Other GATA family TFs
Other Fragaria vesca TFs

612 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_026770 Acremonium chrysogenum ACRE_026770 I
ACYPI004768 Acyrthosiphon pisum ACYPI004768 N
AAEL011092 Aedes aegypti AAEL011092 N
AGOS_AFL127C Ashbya gossypii AGOS_AFL127C I
BAUCODRAFT_567336 Baudoinia compniacensis BAUCODRAFT_567336 I
BGHDH14_bgh06435 Blumeria graminis BGHDH14_bgh06435 I
PV04_04630 Capronia semiimmersa PV04_04630 I
CLEC007177 Cimex lectularius CLEC007177 N
ENSCING00000020769 Ciona intestinalis ENSCING00000020769 N
ENSCSAVG00000000499 Ciona savignyi ENSCSAVG00000000499 N
CpipJ_CPIJ009184 Culex pipiens CpipJ_CPIJ009184 N
CPIJ009184 Culex quinquefasciatus CPIJ009184 N
DOTSEDRAFT_72726 Dothistroma septosporum DOTSEDRAFT_72726 I
ENSGMOG00000019538 Gadus morhua ENSGMOG00000019538 N
kdm5bb Gasterosteus aculeatus ENSGACG00000011868 N
KAFR_0A07050 Kazachstania africana KAFR_0A07050 I
KLLA0_C16203g Kluyveromyces lactis KLLA0_C16203g I
KLTH0H03410g Kluyveromyces thermotolerans KLTH0H03410g I
Kwal_24206 Kluyveromyces waltii Kwal_24206 I
SAKL0A03674g Lachancea kluyveri SAKL0A03674g I
KLTH0H03410g Lachancea thermotolerans KLTH0H03410g I
LDEC003750 Leptinotarsa decemlineata LDEC003750 N
KDM5B Loxodonta africana ENSLAFG00000005104 N
LLOJ009523 Lutzomyia longipalpis LLOJ009523 N
fgenesh1_pg.C_scaffold_2000567 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_2000567 I
estExt_Genewise1Plus.C_chr_80065 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_80065 I
NCAS_0D03980 Naumovozyma castellii NCAS_0D03980 I
OIDMADRAFT_165409 Oidiodendron maius OIDMADRAFT_165409 I
PFICI_11606 Pestalotiopsis fici PFICI_11606 I
ENSPMAG00000003030 Petromyzon marinus ENSPMAG00000003030 N
MYCFIDRAFT_104171 Pseudocercospora fijiensis MYCFIDRAFT_104171 I
RPRC012847 Rhodnius prolixus RPRC012847 N
SU7_0694 Saccharomyces arboricola SU7_0694 I
18935_YMR176W Saccharomyces bayanus 18935_YMR176W I
Scas_Contig720.39 Saccharomyces castellii Scas_Contig720.39 I
ECM5 Saccharomyces cerevisiae YMR176W I
SKUD_186004 Saccharomyces kudriavzevii SKUD_186004 I
17061_Multiple Saccharomyces mikatae 17061_Multiple I
16628_YMR176W Saccharomyces paradoxus 16628_YMR176W I
AACERI_AaceriAFL127C Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFL127C I
SEPMUDRAFT_46716 Sphaerulina musiva SEPMUDRAFT_46716 I
TRIATDRAFT_229470 Trichoderma atroviride TRIATDRAFT_229470 I
L798_11923 Zootermopsis nevadensis L798_11923 N
ZBAI_06663 Zygosaccharomyces bailii ZBAI_06663 I
ZBAI_04622 Zygosaccharomyces bailii ZBAI_04622 I
ZYRO0E07546g Zygosaccharomyces rouxii ZYRO0E07546g I
Mycgr3G74352 Zymoseptoria tritici Mycgr3G74352 I