orange1.1g032112m.g (Citrus sinensis)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 orange1.1g032112m.g T196716_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.838 0.889
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.818 0.889
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.818 0.889
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g032112m GATA 36 71

Links

Other GATA family TFs
Other Citrus sinensis TFs

143 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000026090 Astyanax mexicanus ENSAMXG00000026090 N 0.000
msgn1 Danio rerio ENSDARG00000070546 N 0.000
ENSGMOG00000014284 Gadus morhua ENSGMOG00000014284 N 0.000
msgn1 Gasterosteus aculeatus ENSGACG00000008864 N 0.000
msgn1 Gasterosteus aculeatus ENSGACG00000008865 N 0.000
ENSLOCG00000017878 Lepisosteus oculatus ENSLOCG00000017878 I 0.000
Ogr03919 Ophisaurus gracilis Ogr03919 I 0.000
ENSONIG00000013311 Oreochromis niloticus ENSONIG00000013311 N 0.000
msgn1 Oryzias latipes ENSORLG00000014828 N 0.000
msgn1 Takifugu rubripes ENSTRUG00000008888 N 0.000
msgn1 Tetraodon nigroviridis ENSTNIG00000001511 N 0.000
ENSXMAG00000020371 Xiphophorus maculatus ENSXMAG00000020371 N 0.000