Pavir.J33978 (Panicum virgatum)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Pavir.J33978 T196774_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.857 0.889
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.857 0.889
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.856 0.944
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.856 0.944
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.856 0.944
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.851 0.917
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.843 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.843 0.806
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.838 0.806
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.832 0.833
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.832 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.832 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.832 0.833
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.832 0.833
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.830 0.778
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.823 0.833
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.833
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J33978.1.p GATA 254 289

Links

Other GATA family TFs
Other Panicum virgatum TFs

613 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
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ENSACAG00000008631 Anolis carolinensis ENSACAG00000008631 I
Afo_R012751 Aptenodytes forsteri Afo_R012751 I
ENSP00000306472-D2 Bos grunniens ENSP00000306472-D2 N
ENSP00000306549-D3 Bos grunniens ENSP00000306549-D3 N
ENSBTAG00000046306 Bos taurus ENSBTAG00000046306 I
ENSCJAG00000004097 Callithrix jacchus ENSCJAG00000004097 I
Aan_R010039 Calypte anna Aan_R010039 I
ENSCAFG00000031919 Canis familiaris ENSCAFG00000031919 I
ENSCAFG00000025411 Canis familiaris ENSCAFG00000025411 I
ENSCAFG00000023024 Canis familiaris ENSCAFG00000023024 I
Cmyd_10018130 Chelonia mydas Cmyd_10018130 I
ENSCSAG00000007182 Chlorocebus sabaeus ENSCSAG00000007182 I
ENSDNOG00000043873 Dasypus novemcinctus ENSDNOG00000043873 I
ENSDNOG00000015218 Dasypus novemcinctus ENSDNOG00000015218 I
ENSECAG00000009040 Equus caballus ENSECAG00000009040 N
ENSECAG00000000093 Equus caballus ENSECAG00000000093 I
ENSFCAG00000025614 Felis catus ENSFCAG00000025614 I
ENSGALG00000027212 Gallus gallus ENSGALG00000027212 I
ENSGALG00000028720 Gallus gallus ENSGALG00000028720 I
ENSGGOG00000022734 Gorilla gorilla ENSGGOG00000022734 I
HSFY1 Homo sapiens ENSG00000172468 D
HSFX2 Homo sapiens ENSG00000268738 I
HSFX1 Homo sapiens ENSG00000171116 I
HSFY2 Homo sapiens ENSG00000169953 D
ENSLACG00000012431 Latimeria chalumnae ENSLACG00000012431 I
ENSLOCG00000014483 Lepisosteus oculatus ENSLOCG00000014483 I
ENSLAFG00000016976 Loxodonta africana ENSLAFG00000016976 I
ENSLAFG00000010861 Loxodonta africana ENSLAFG00000010861 I
ENSP00000359444 Macaca fascicularis ENSP00000359444 I
ENSMMUG00000002887 Macaca mulatta ENSMMUG00000002887 I
ENSMEUG00000003908 Macropus eugenii ENSMEUG00000003908 I
ENSMGAG00000014469 Meleagris gallopavo ENSMGAG00000014469 I
ENSMGAG00000005814 Meleagris gallopavo ENSMGAG00000005814 I
ENSMGAG00000014467 Meleagris gallopavo ENSMGAG00000014467 I
ENSMICG00000013064 Microcebus murinus ENSMICG00000013064 N
ENSMODG00000027398 Monodelphis domestica ENSMODG00000027398 I
ENSMODG00000028107 Monodelphis domestica ENSMODG00000028107 I
Hsfy2 Mus musculus ENSMUSG00000045336 I
ENSMLUG00000024907 Myotis lucifugus ENSMLUG00000024907 I
ENSMLUG00000015387 Myotis lucifugus ENSMLUG00000015387 I
ENSNLEG00000013483 Nomascus leucogenys ENSNLEG00000013483 I
Ogr08578 Ophisaurus gracilis Ogr08578 I
ENSOANG00000028803 Ornithorhynchus anatinus ENSOANG00000028803 I
ENSOANG00000012192 Ornithorhynchus anatinus ENSOANG00000012192 I
ENSOANG00000001091 Ornithorhynchus anatinus ENSOANG00000001091 I
ENSPANG00000004032 Papio anubis ENSPANG00000004032 I
Pvit_14501 Pogona vitticeps Pvit_14501 I
ENSPPYG00000020808 Pongo abelii ENSPPYG00000020808 I
Hsfy2 Rattus norvegicus ENSRNOG00000038569 I
ENSSSCG00000012734 Sus scrofa ENSSSCG00000012734 I
ENSTBEG00000002283 Tupaia belangeri ENSTBEG00000002283 I
ENSTTRG00000000641 Tursiops truncatus ENSTTRG00000000641 N
ENSTTRG00000003386 Tursiops truncatus ENSTTRG00000003386 N
Tal_R003042 Tyto alba Tal_R003042 I
ENSVPAG00000004400 Vicugna pacos ENSVPAG00000004400 I