CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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11320_YIR013C
(
Saccharomyces paradoxus
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
11320_YIR013C
T196995_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
GAT4
M00050_2.00
Saccharomyces cerevisiae
NNAGATCTMN
NKAGATCTNN
PBM
Badis et al.(2008)
GAT4_4527
0.867
1.000
GAT4
M01547_2.00
Saccharomyces cerevisiae
NNNRWWYNNN
NNNRWWYNNN
PBM
Zhu et al.(2009)
Gat4
0.867
1.000
GAT4
M07479_2.00
Saccharomyces cerevisiae
NNAGATCYNNN
NNNRGATCTNN
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0302.1
0.867
1.000
GAT4
M08561_2.00
Saccharomyces cerevisiae
NNAGATCYNNN
NNNRGATCTNN
Misc
DeBoer et al.(2011)
YIR013C_565
0.867
1.000
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
11320_YIR013C
GATA
53
89
CGQCGEIKTSLQWREGPNGAACLCNACGLFFRKLILR
Links
Other
GATA
family TFs
Other
Saccharomyces paradoxus
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ia03528
Panicum virgatum
Pavir.Ia03528
N
Pavir.Ib01437
Panicum virgatum
Pavir.Ib01437
N
Si039895m.g
Setaria italica
Si039895m.g
N
Sb01g037520
Sorghum bicolor
Sb01g037520
N
GRMZM2G038015
Zea mays
GRMZM2G038015
N