CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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maker-nMf.1.1.scaf00641-snap-gene-0.11
(
Meloidogyne floridensis
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
maker-nMf.1.1.scaf00641-snap-gene-0.11
T197586_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
maker-nMf.1.1.scaf00641-snap-gene-0.11-mRNA-1
GATA
302
325
CSNCNGTNTTLWRRNNNGEPVCKK
Links
Other
GATA
family TFs
Other
Meloidogyne floridensis
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCDUO_17222
Ancylostoma duodenale
ANCDUO_17222
N
0.856
CGOC_0001347601
Cylicostephanus goldi
CGOC_0001347601
N
0.816
GPLIN_000554300
Globodera pallida
GPLIN_000554300
N
0.837
TTAC_0000382701
Hydatigera taeniaeformis
TTAC_0000382701
N
0.819
snap_masked-nMf.1.1.scaf31837-processed-gene-0.1
Meloidogyne floridensis
snap_masked-nMf.1.1.scaf31837-processed-gene-0.1
N
0.847
NECAME_00548
Necator americanus
NECAME_00548
N
0.856
NBR_0000655401
Nippostrongylus brasiliensis
NBR_0000655401
N
0.856
SROB_0000835501
Schistosoma rodhaini
SROB_0000835501
N
0.847