CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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scaffold44-EXSNAP2012.12
(
Pristionchus exspectatus
)
GATA
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00320 (GATA)
IPR000679
scaffold44-EXSNAP2012.12
T197781_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gata1
M08127_2.00
Mus musculus
RNAGATAAGRV
BYCTTATCTNY
ChIP-seq
Mathelier et al.(2014)
MA0035.3
0.810
0.714
Gata1
M09124_2.00
Mus musculus
BKBNNNNNNVWGATAAVVV
BBBTTATCWBNNNNNNVMV
Misc
Kulakovskiy et al.(2013)
GATA1_MOUSE.H11MO.0.A
0.810
0.714
grn
M03754_2.00
Drosophila melanogaster
HGATAASV
BSTTATCD
SELEX
Nitta et al.(2015)
grn_1
0.803
0.714
grn
M03755_2.00
Drosophila melanogaster
NHGATAAGNNNCTTATCDN
NHGATAAGNNNCTTATCDN
SELEX
Nitta et al.(2015)
grn_2
0.803
0.714
grn
M03756_2.00
Drosophila melanogaster
NHGATAACNNNGTTATCDN
NHGATAACNNNGTTATCDN
SELEX
Nitta et al.(2015)
grn_3
0.803
0.714
GATA2
M04879_2.00
Homo sapiens
VHGATAHSV
BSDTATCDB
SELEX
Yin et al.(2017)
GATA2_eDBD_HT-SELEX
0.803
0.700
GATA2
M08125_2.00
Homo sapiens
NNAGATAAGNN
NNCTTATCTNN
ChIP-seq
Mathelier et al.(2014)
MA0036.3
0.803
0.700
GATA2
M07966_2.00
Homo sapiens
NVWGATAAVVN
NBBTTATCWBN
ChIP-seq
Gerstein et al.(2012)
HUVEC_GATA2_UCD
0.803
0.700
GATA2
M07967_2.00
Homo sapiens
BKNNNNNNNSWGATAASV
BSTTATCWSNNNNNNNMV
ChIP-seq
Gerstein et al.(2012)
K562b_GATA2_UCD
0.803
0.700
GATA2
M07968_2.00
Homo sapiens
NNKNNNNNNNVWGATAAV
BTTATCWBNNNNNNNMNN
ChIP-seq
Gerstein et al.(2012)
K562_GATA2_HudsonAlpha
0.803
0.700
GATA2
M07969_2.00
Homo sapiens
NVWGATAAVV
BBTTATCWBN
ChIP-seq
Gerstein et al.(2012)
K562_GATA2_UChicago
0.803
0.700
GATA2
M07970_2.00
Homo sapiens
VWGATARVVN
NBBYTATCWB
ChIP-seq
Gerstein et al.(2012)
SH-SY5Y_GATA2_UCD
0.803
0.700
GATA2
M09119_2.00
Homo sapiens
NKKNNNNNNDVAGATAASV
BSTTATCTBHNNNNNNMMN
Misc
Kulakovskiy et al.(2013)
GATA2_HUMAN.H11MO.0.A
0.803
0.700
Gata2
M09121_2.00
Mus musculus
DVAGATAASVN
NBSTTATCTBH
Misc
Kulakovskiy et al.(2013)
GATA2_MOUSE.H11MO.0.A
0.803
0.700
GATA2
M09550_2.00
Homo sapiens
VWGATAAGVN
NBCTTATCWB
Misc
Heinz et al.(2010)
K562-GATA2_GSE18829
0.803
0.700
GATA2
M10594_2.00
Homo sapiens
BVNGATRNBN
NVNYATCNBV
Transfac
Matys et al.(2006)
V$GATA2_01
0.803
0.700
GATA2
M10595_2.00
Homo sapiens
NNWGATAASR
YSTTATCWNN
Transfac
Matys et al.(2006)
V$GATA2_02
0.803
0.700
GATA2
M10596_2.00
Homo sapiens
HSAGATAWBA
TVWTATCWSD
Transfac
Matys et al.(2006)
V$GATA2_03
0.803
0.700
GATA2
M10597_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA2_Q5
0.803
0.700
GATA2
M04880_2.00
Homo sapiens
NHGATADSV
BSHTATCDN
SELEX
Yin et al.(2017)
GATA2_eDBD_Methyl-HT-SELEX
0.803
0.700
Gata3
M00166_2.00
Mus musculus
NNNHGATHNN
NNDATCDNNN
PBM
Badis et al.(2009)
Gata3_1024
0.803
0.686
GATA3
M03063_2.00
Homo sapiens
HGATARVV
BBYTATCD
SELEX
Jolma et al.(2013)
GATA3_1
0.803
0.686
GATA3
M03064_2.00
Homo sapiens
HGATAAVV
BBTTATCD
SELEX
Jolma et al.(2013)
GATA3_2
0.803
0.686
GATA1
M02738_2.00
Homo sapiens
GATWASMH
DKSTWATC
SELEX
Jolma et al.(2010)
GATA1_dimer
0.803
0.686
GATA1
M02739_2.00
Homo sapiens
HGATAA
TTATCD
SELEX
Jolma et al.(2010)
GATA1_monomer
0.803
0.686
GATA1
M04861_2.00
Homo sapiens
GATAAKDNHMTTATC
GATAAKDNHMTTATC
SELEX
Yin et al.(2017)
GATA1_eDBD_HT-SELEX
0.803
0.686
GATA3
M04863_2.00
Homo sapiens
HGATAASRATCW
WGATYSTTATCD
SELEX
Yin et al.(2017)
GATA3_FL_HT-SELEX_1
0.803
0.686
GATA3
M04864_2.00
Homo sapiens
HGATAASATCD
HGATSTTATCD
SELEX
Yin et al.(2017)
GATA3_FL_HT-SELEX_2
0.803
0.686
Gata3
M05867_2.00
Mus musculus
GATAAN
NTTATC
SMiLE-seq
Isakova et al.(2017)
GATA3
0.803
0.686
GATA1
M07963_2.00
Homo sapiens
NSWGATAASVN
NBSTTATCWSN
ChIP-seq
Gerstein et al.(2012)
K562b_GATA1_UCD
0.803
0.686
GATA1
M07964_2.00
Homo sapiens
NNKNNNNNNNSWGATAAV
BTTATCWSNNNNNNNMNN
ChIP-seq
Gerstein et al.(2012)
PBDE_GATA1_UCD
0.803
0.686
GATA3
M07965_2.00
Homo sapiens
NWGATWRNVATCWSN
NSWGATBNYWATCWN
ChIP-seq
Gerstein et al.(2012)
T-47D_GATA3_HudsonAlpha
0.803
0.686
GATA1
M08202_2.00
Homo sapiens
NBKBNNNNNNSWGATAASVN
NBSTTATCWSNNNNNNVMVN
ChIP-seq
Contrino et al.(2012)
Mv73
0.803
0.686
GATA1
M08203_2.00
Homo sapiens
WGATNNNATC
GATNNNATCW
ChIP-seq
Contrino et al.(2012)
Mv75
0.803
0.686
GATA1
M09115_2.00
Homo sapiens
NBKBNNNNNNVWGATAAVV
BBTTATCWBNNNNNNVMVN
Misc
Kulakovskiy et al.(2013)
GATA1_HUMAN.H11MO.0.A
0.803
0.686
GATA3
M09116_2.00
Homo sapiens
DVAGATAAVRD
HYBTTATCTBH
Misc
Kulakovskiy et al.(2013)
GATA3_HUMAN.H11MO.0.A
0.803
0.686
Gata3
M09122_2.00
Mus musculus
NVWGATAAVVDBH
DVHBBTTATCWBN
Misc
Kulakovskiy et al.(2013)
GATA3_MOUSE.H11MO.0.A
0.803
0.686
GATA1
M09549_2.00
Homo sapiens
SWGATAAGVV
BBCTTATCWS
Misc
Heinz et al.(2010)
K562-GATA1_GSE18829
0.803
0.686
Gata3
M09551_2.00
Mus musculus
AGATBNNNAGATARV
BYTATCTNNNVATCT
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_1
0.803
0.686
Gata3
M09552_2.00
Mus musculus
AGATBDNNNNDSWGATWRNN
NNYWATCWSHNNNNHVATCT
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_2
0.803
0.686
Gata3
M09553_2.00
Mus musculus
NNNNNNWGATNDNATCWNNN
NNNWGATNHNATCWNNNNNN
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_3
0.803
0.686
Gata3
M09554_2.00
Mus musculus
NWGATNNNNATCWNN
NNWGATNNNNATCWN
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_4
0.803
0.686
Gata3
M09555_2.00
Mus musculus
WGATAAVV
BBTTATCW
Misc
Heinz et al.(2010)
iTreg-Gata3_GSE20898_5
0.803
0.686
GATA1
M10577_2.00
Homo sapiens
SVNGATDBBN
NVVHATCNBS
Transfac
Matys et al.(2006)
V$GATA1_01
0.803
0.686
GATA1
M10578_2.00
Homo sapiens
NHVNHGATAVKVBN
NVBMBTATCDNBDN
Transfac
Matys et al.(2006)
V$GATA1_02
0.803
0.686
GATA1
M10579_2.00
Homo sapiens
RNSNDGATTRBNRN
NYNVYAATCHNSNY
Transfac
Matys et al.(2006)
V$GATA1_03
0.803
0.686
GATA1
M10580_2.00
Homo sapiens
DNVWGATARVNVN
NBNBYTATCWBNH
Transfac
Matys et al.(2006)
V$GATA1_04
0.803
0.686
GATA1
M10581_2.00
Homo sapiens
VMHGATAAVM
KBTTATCDKB
Transfac
Matys et al.(2006)
V$GATA1_05
0.803
0.686
GATA1
M10582_2.00
Homo sapiens
MNAGATAAVR
YBTTATCTNK
Transfac
Matys et al.(2006)
V$GATA1_06
0.803
0.686
GATA1
M10583_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA1_10
0.803
0.686
GATA1
M10584_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA1_Q6
0.803
0.686
GATA3
M10586_2.00
Homo sapiens
NNGATDRNR
YNYHATCNN
Transfac
Matys et al.(2006)
V$GATA3_01
0.803
0.686
GATA3
M10587_2.00
Homo sapiens
NRWGATAANA
TNTTATCWYN
Transfac
Matys et al.(2006)
V$GATA3_02
0.803
0.686
GATA3
M10588_2.00
Homo sapiens
ANWGATMWDA
THWKATCWNT
Transfac
Matys et al.(2006)
V$GATA3_03
0.803
0.686
GATA3
M10589_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$GATA3_Q4
0.803
0.686
GATA1
M04862_2.00
Homo sapiens
GATAABNNNVTTATC
GATAABNNNVTTATC
SELEX
Yin et al.(2017)
GATA1_eDBD_Methyl-HT-SELEX
0.803
0.686
GATA3
M04865_2.00
Homo sapiens
WGATAASGATCW
WGATCSTTATCW
SELEX
Yin et al.(2017)
GATA3_FL_Methyl-HT-SELEX_1
0.803
0.686
GATA3
M04866_2.00
Homo sapiens
WGATAASATCW
WGATSTTATCW
SELEX
Yin et al.(2017)
GATA3_FL_Methyl-HT-SELEX_2
0.803
0.686
elt-1
M08206_2.00
Caenorhabditis elegans
GATWDNVATCT
AGATBNHWATC
ChIP-seq
Contrino et al.(2012)
Mw144
0.803
0.700
elt-1
M08207_2.00
Caenorhabditis elegans
TGATAASR
YSTTATCA
ChIP-seq
Contrino et al.(2012)
Mw145
0.803
0.700
For this family, TFs with SR scores >
0.802
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold44-EXSNAP2012.12
GATA
188
222
CVNCRATVTPLWRRDSEGRYLCNACALYLKTNGTH
scaffold44-EXSNAP2012.12
GATA
242
276
CVNCGCTSTTLWRRNGKGEPVCNACGLYFNLHKVQ
Links
Other
GATA
family TFs
Other
Pristionchus exspectatus
TFs
285 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy