CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SCL29
(
Arabidopsis thaliana
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
AT3G13840
T199830_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT3G13840.1
GRAS
145
510
AEKLLNPCALAITASNSSRVQHYLCVLSELASSSGDANRRLAAFGLRALQHHLSSSSVSSSFWPVFTFASAEVKMFQKTLLKFYEVSPWFALPNNMANSAILQILAQDPKDKKDLHIIDIGVSHGMQWPTLLEALSCRLEGPPPRVRITVISDLTADIPFSVGPPGYNYGSQLLGFARSLKINLQISVLDKLQLIDTSPHENLIVCAQFRLHHLKHSINDERGETLKAVRSLRPKGVVLCENNGECSSSADFAAGFSKKLEYVWKFLDSTSSGFKEENSEERKLMEGEATKVLMNAGDMNEGKEKWYERMREAGFFVEAFEEDAVDGAKSLLRKYDNNWEIRMEDGDTFAGLMWKGEAVSFCSLWK
Links
Other
GRAS
family TFs
Other
Arabidopsis thaliana
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
fgenesh2_kg.3__1487__AT3G13840.1
Arabidopsis lyrata
fgenesh2_kg.3__1487__AT3G13840.1
N
0.919
Bostr.7816s0001
Boechera stricta
Bostr.7816s0001
N
0.873
Bo5g131770
Brassica oleracea
Bo5g131770
N
0.768
Bra027378
Brassica rapa
Bra027378
N
0.763
Cagra.0736s0042
Capsella grandiflora
Cagra.0736s0042
N
0.836
Carubv10015988m.g
Capsella rubella
Carubv10015988m.g
N
0.828
Thhalv10020543m.g
Eutrema salsugineum
Thhalv10020543m.g
N
0.799