AMTR_s00078p00085160 (Amborella trichopoda)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AMTR_s00078p00085160 T204401_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.827 0.807
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.827 0.807
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.827 0.807
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.827 0.807
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.825 0.807
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.825 0.807
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.825 0.807
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.825 0.807
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.813 0.807
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.813 0.807
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.812 0.842
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.807 0.825
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.807 0.825
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.807 0.825
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.807 0.825
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.717 0.649
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.717 0.649
HB-5
M06924_2.00 		Arabidopsis thaliana
NNAHCAATWATTKDNNNHWWH
DWWDNNNHMAATWATTGDTNN		 Dap-seq
OMalley et al.(2016)
ATHB40_col_a 		0.716 0.632
HB-5
M06925_2.00 		Arabidopsis thaliana
HHAATWATTGDWNN
NNWHCAATWATTDD		 Dap-seq
OMalley et al.(2016)
ATHB40_colamp_a 		0.716 0.632
ATHB-53
M06934_2.00 		Arabidopsis thaliana
HMAATAATTRD
HYAATTATTKD		 Dap-seq
OMalley et al.(2016)
ATHB53_col_a 		0.712 0.596
ATHB-53
M06935_2.00 		Arabidopsis thaliana
NNWHCAATWATTDDN
NHHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB53_colamp_a 		0.712 0.596
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.675 0.772
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.675 0.772
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.655 0.754
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.655 0.754
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.611 0.649
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.611 0.649
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN03777 Homeodomain 68 124

Links

Other Homeodomain family TFs
Other Amborella trichopoda TFs

815 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32837 Aegilops tauschii F775_32837 N 0.000
Aquca_022_00282 Aquilegia coerulea Aquca_022_00282 I 0.000
BRADI2G24790 Brachypodium distachyon BRADI2G24790 N 0.000
LPERR05G13650 Leersia perrieri LPERR05G13650 N 0.000
cassava2514.valid.m1 Manihot esculenta cassava2514.valid.m1 I 0.000
cassava2513.valid.m1 Manihot esculenta cassava2513.valid.m1 I 0.000
cassava2515.valid.m1 Manihot esculenta cassava2515.valid.m1 I 0.000
cassava43226.valid.m1 Manihot esculenta cassava43226.valid.m1 N 0.000
cassava43227.valid.m1 Manihot esculenta cassava43227.valid.m1 N 0.000
mgf025137m Mimulus guttatus mgf025137m N 0.000
GSMUA_Achr10G04530_001 Musa acuminata GSMUA_Achr10G04530_001 N 0.000
OBART05G17230 Oryza barthii OBART05G17230 N 0.000
OB05G25040 Oryza brachyantha OB05G25040 N 0.000
ORGLA05G0148600 Oryza glaberrima ORGLA05G0148600 N 0.000
OGLUM05G18240 Oryza glumaepatula OGLUM05G18240 N 0.000
BGIOSGA018023 Oryza indica BGIOSGA018023 N 0.000
OMERI05G14890 Oryza meridionalis OMERI05G14890 N 0.000
ONIVA05G17930 Oryza nivara ONIVA05G17930 N 0.000
OPUNC05G15090 Oryza punctata OPUNC05G15090 N 0.000
ORUFI05G18410 Oryza rufipogon ORUFI05G18410 N 0.000
OS05G0426200 Oryza sativa OS05G0426200 N 0.000
Pavir.J02083 Panicum virgatum Pavir.J02083 N 0.000
Pavir.J07259 Panicum virgatum Pavir.J07259 N 0.000
Pavir.J18990 Panicum virgatum Pavir.J18990 N 0.000
Si001354m.g Setaria italica Si001354m.g N 0.000
Sb09g020880 Sorghum bicolor Sb09g020880 N 0.000
Traes_5AL_41B98AAEF Triticum aestivum Traes_5AL_41B98AAEF N 0.000
Traes_1DL_F410CF9FD Triticum aestivum Traes_1DL_F410CF9FD N 0.000
Traes_1AL_C4FA8404A Triticum aestivum Traes_1AL_C4FA8404A N 0.000
TRIUR3_22935 Triticum urartu TRIUR3_22935 N 0.000
GRMZM2G456568 Zea mays GRMZM2G456568 N 0.000
GRMZM2G104400 Zea mays GRMZM2G104400 N 0.000