CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HOX16 *(Oryza indica)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	BGIOSGA008976	T204691_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.858	0.912
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.858	0.912
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.858	0.912
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.858	0.912
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.813	0.807
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.813	0.789
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.813	0.772
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.813	0.772
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.813	0.772
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.796	0.754
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.796	0.754
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.796	0.754
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.796	0.754
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.796	0.754
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.796	0.754
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.723	0.667
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.723	0.667
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.722	0.684
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.722	0.684
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.718	0.649
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.718	0.649
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.657	0.754
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.657	0.754
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.637	0.719
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.637	0.719
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BGIOSGA008976-PA	Homeodomain	77	133	PEKKRRLTPEQVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Oryza indica* TFs

801 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
TVAG_535180	Trichomonas vaginalis	TVAG_535180	I	0.000
TVAG_398170	Trichomonas vaginalis	TVAG_398170	I	0.000
TVAG_418370	Trichomonas vaginalis	TVAG_418370	I	0.000
TVAG_422850	Trichomonas vaginalis	TVAG_422850	I	0.000
TVAG_431290	Trichomonas vaginalis	TVAG_431290	I	0.000
TVAG_438570	Trichomonas vaginalis	TVAG_438570	N	0.000
TVAG_439260	Trichomonas vaginalis	TVAG_439260	N	0.000
TVAG_446510	Trichomonas vaginalis	TVAG_446510	I	0.000
TVAG_464320	Trichomonas vaginalis	TVAG_464320	I	0.000
TVAG_492320	Trichomonas vaginalis	TVAG_492320	I	0.000
TVAG_500220	Trichomonas vaginalis	TVAG_500220	I	0.000
TVAG_500600	Trichomonas vaginalis	TVAG_500600	N	0.000
TVAG_503000	Trichomonas vaginalis	TVAG_503000	N	0.000
TVAG_514140	Trichomonas vaginalis	TVAG_514140	I	0.000
TVAG_518010	Trichomonas vaginalis	TVAG_518010	I	0.000
TVAG_528950	Trichomonas vaginalis	TVAG_528950	I	0.000
TVAG_384340	Trichomonas vaginalis	TVAG_384340	I	0.000
TVAG_543070	Trichomonas vaginalis	TVAG_543070	N	0.000
TVAG_552140	Trichomonas vaginalis	TVAG_552140	N	0.000
TVAG_555690	Trichomonas vaginalis	TVAG_555690	I	0.000
TVAG_556150	Trichomonas vaginalis	TVAG_556150	I	0.000
TVAG_557940	Trichomonas vaginalis	TVAG_557940	N	0.000
TVAG_563060	Trichomonas vaginalis	TVAG_563060	I	0.000
TVAG_566490	Trichomonas vaginalis	TVAG_566490	I	0.000
TVAG_574680	Trichomonas vaginalis	TVAG_574680	N	0.000
TVAG_578630	Trichomonas vaginalis	TVAG_578630	N	0.000
TVAG_583920	Trichomonas vaginalis	TVAG_583920	N	0.000
TVAG_584810	Trichomonas vaginalis	TVAG_584810	N	0.000
TVAG_591110	Trichomonas vaginalis	TVAG_591110	N	0.000
TVAG_597140	Trichomonas vaginalis	TVAG_597140	N	0.000
TVAG_598920	Trichomonas vaginalis	TVAG_598920	N	0.000
TVAG_601320	Trichomonas vaginalis	TVAG_601320	N	0.000
TVAG_197590	Trichomonas vaginalis	TVAG_197590	N	0.000
TVAG_022950	Trichomonas vaginalis	TVAG_022950	N	0.000
TVAG_033220	Trichomonas vaginalis	TVAG_033220	N	0.000
TVAG_048830	Trichomonas vaginalis	TVAG_048830	I	0.000
TVAG_050010	Trichomonas vaginalis	TVAG_050010	I	0.000
TVAG_058570	Trichomonas vaginalis	TVAG_058570	N	0.000
TVAG_072910	Trichomonas vaginalis	TVAG_072910	N	0.000
TVAG_078880	Trichomonas vaginalis	TVAG_078880	N	0.000
TVAG_085400	Trichomonas vaginalis	TVAG_085400	I	0.000
TVAG_089940	Trichomonas vaginalis	TVAG_089940	N	0.000
TVAG_106130	Trichomonas vaginalis	TVAG_106130	N	0.000
TVAG_141650	Trichomonas vaginalis	TVAG_141650	N	0.000
TVAG_148850	Trichomonas vaginalis	TVAG_148850	N	0.000
TVAG_162250	Trichomonas vaginalis	TVAG_162250	N	0.000
TVAG_167420	Trichomonas vaginalis	TVAG_167420	N	0.000
TVAG_182100	Trichomonas vaginalis	TVAG_182100	N	0.000
TVAG_008200	Trichomonas vaginalis	TVAG_008200	N	0.000
TVAG_203210	Trichomonas vaginalis	TVAG_203210	N	0.000
TVAG_208090	Trichomonas vaginalis	TVAG_208090	I	0.000
TVAG_208170	Trichomonas vaginalis	TVAG_208170	I	0.000
TVAG_227410	Trichomonas vaginalis	TVAG_227410	N	0.000
TVAG_248200	Trichomonas vaginalis	TVAG_248200	N	0.000
TVAG_255490	Trichomonas vaginalis	TVAG_255490	I	0.000
TVAG_261460	Trichomonas vaginalis	TVAG_261460	N	0.000
TVAG_271460	Trichomonas vaginalis	TVAG_271460	N	0.000
TVAG_288340	Trichomonas vaginalis	TVAG_288340	N	0.000
TVAG_315670	Trichomonas vaginalis	TVAG_315670	I	0.000
TVAG_315700	Trichomonas vaginalis	TVAG_315700	I	0.000
TVAG_320670	Trichomonas vaginalis	TVAG_320670	I	0.000
TVAG_333410	Trichomonas vaginalis	TVAG_333410	N	0.000
TVAG_347010	Trichomonas vaginalis	TVAG_347010	N	0.000
TVAG_356580	Trichomonas vaginalis	TVAG_356580	I	0.000

HOX16 (Oryza indica) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

801 Related TFs

HOX16 **(Oryza indica)
Homeodomain**