Bo1g008580 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo1g008580 T204849_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.786 0.868
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.653 0.447
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.653 0.447
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.653 0.447
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.653 0.447
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo1g008580.1 Homeodomain 151 188

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

1002 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_13449 Aegilops tauschii F775_13449 N 0.000
F775_15862 Aegilops tauschii F775_15862 N 0.000
BRADI3G46680 Brachypodium distachyon BRADI3G46680 N 0.000
BRADI3G46690 Brachypodium distachyon BRADI3G46690 N 0.000
BRADI5G12127 Brachypodium distachyon BRADI5G12127 N 0.000
MLOC_13416 Hordeum vulgare MLOC_13416 N 0.000
LPERR02G17460 Leersia perrieri LPERR02G17460 N 0.000
LPERR04G11520 Leersia perrieri LPERR04G11520 N 0.000
ORGLA02G0186100 Oryza glaberrima ORGLA02G0186100 N 0.000
OGLUM04G14540 Oryza glumaepatula OGLUM04G14540 N 0.000
OGLUM02G21750 Oryza glumaepatula OGLUM02G21750 N 0.000
BGIOSGA008478 Oryza indica BGIOSGA008478 N 0.000
BGIOSGA016530 Oryza indica BGIOSGA016530 N 0.000
OMERI02G21100 Oryza meridionalis OMERI02G21100 N 0.000
OMERI04G13070 Oryza meridionalis OMERI04G13070 N 0.000
ONIVA02G23720 Oryza nivara ONIVA02G23720 N 0.000
ONIVA04G12810 Oryza nivara ONIVA04G12810 N 0.000
OPUNC02G19370 Oryza punctata OPUNC02G19370 N 0.000
OPUNC04G12540 Oryza punctata OPUNC04G12540 N 0.000
ORUFI02G22630 Oryza rufipogon ORUFI02G22630 N 0.000
ORUFI04G16070 Oryza rufipogon ORUFI04G16070 N 0.000
OS04G0456900 Oryza sativa OS04G0456900 N 0.000
Pavir.Gb01550 Panicum virgatum Pavir.Gb01550 N 0.000
Pavir.Ab01993 Panicum virgatum Pavir.Ab01993 N 0.000
Pavir.Aa01600 Panicum virgatum Pavir.Aa01600 N 0.000
Si017107m.g Setaria italica Si017107m.g N 0.000
Si009909m.g Setaria italica Si009909m.g N 0.000
Sb06g018710 Sorghum bicolor Sb06g018710 N 0.000
Sb04g023730 Sorghum bicolor Sb04g023730 N 0.000
Traes_2AL_C76F4E089 Triticum aestivum Traes_2AL_C76F4E089 N 0.000
Traes_2BL_7BE6FCE7D Triticum aestivum Traes_2BL_7BE6FCE7D N 0.000
TRAES3BF114600150CFD_g Triticum aestivum TRAES3BF114600150CFD_g N 0.000
Traes_6DL_10077D5F6 Triticum aestivum Traes_6DL_10077D5F6 N 0.000
TRIUR3_20987 Triticum urartu TRIUR3_20987 N 0.000
AC210616.4_FG005 Zea mays AC210616.4_FG005 N 0.000
GRMZM2G044322 Zea mays GRMZM2G044322 N 0.000