CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo9g070030 *(Brassica oleracea)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Bo9g070030	T205001_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
HAT22 M06926_2.00	Arabidopsis thaliana	NNYAATCATT	AATGATTRNN	Dap-seq OMalley et al.(2016) HAT22_col_a	0.703	0.685
ATHB-X M06902_2.00	Arabidopsis thaliana	HHAATRATTRN	NYAATYATTDD	Dap-seq OMalley et al.(2016) ATHB18_col_a	0.691	0.685
ATHB-X M06903_2.00	Arabidopsis thaliana	NYAATGATTRV	BYAATCATTRN	Dap-seq OMalley et al.(2016) ATHB18_colamp_a	0.691	0.685
HAT3 M00728_2.00	Arabidopsis thaliana	DTGATTRV	BYAATCAH	PBM Chang et al.(2013) pTH7400	0.682	0.648
ATHB-4 M01065_2.00	Arabidopsis thaliana	NBMTGCATRNN	NNYATGCAKVN	PBM Sullivan et al.(2014) pTH8184	0.682	0.630
ATHB-4 M02042_2.00	Arabidopsis thaliana	NNWTNATTRN	NYAATNAWNN	PBM Weirauch et al.(2014) pTH8667	0.682	0.630
HAT1 M02047_2.00	Arabidopsis thaliana	NMATGATTRN	NYAATCATKN	PBM Weirauch et al.(2014) pTH8107	0.682	0.630
HAT1 M06922_2.00	Arabidopsis thaliana	NHAATGATTRNNWDW	WHWNNYAATCATTDN	Dap-seq OMalley et al.(2016) HAT1_col_a	0.682	0.630
HAT1 M06923_2.00	Arabidopsis thaliana	NYAATCATTDN	NHAATGATTRN	Dap-seq OMalley et al.(2016) HAT1_colamp_a	0.682	0.630
HAT2 M06929_2.00	Arabidopsis thaliana	NHAATGATTRN	NYAATCATTDN	Dap-seq OMalley et al.(2016) HAT2_colamp_a	0.682	0.611
HAT2 M06930_2.00	Arabidopsis thaliana	WNYAATCATWD	HWATGATTRNW	Dap-seq OMalley et al.(2016) HAT2_col_v31	0.682	0.611
For this family, TFs with SR scores > 0.599* will likely have a similar motif*