Bra013076 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra013076 T205088_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.826 0.696
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN

NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.626 0.565
MEIS3
M03093_2.00
Homo sapiens
DTGACANN

NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.618 0.435
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA

TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.618 0.435
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA

TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.618 0.435
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR

YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.618 0.435
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra013076.1-P Homeodomain 289 337

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCDUO_08931 Ancylostoma duodenale ANCDUO_08931 N
ENSACAG00000021966 Anolis carolinensis ENSACAG00000021966 N
AALB008494 Anopheles albimanus AALB008494 N
AARA000519 Anopheles arabiensis AARA000519 N
AARA011012 Anopheles arabiensis AARA011012 N
AATE002306 Anopheles atroparvus AATE002306 N
ACUA015629 Anopheles culicifacies ACUA015629 N
ADAC003415 Anopheles darlingi ADAC003415 N
ADIR000206 Anopheles dirus ADIR000206 N
ADIR010893 Anopheles dirus ADIR010893 N
AEPI004512 Anopheles epiroticus AEPI004512 N
AFAF003029 Anopheles farauti AFAF003029 N
AFUN010566 Anopheles funestus AFUN010566 N
AGAP011711 Anopheles gambiae AGAP011711 N
AMEC008583 Anopheles melas AMEC008583 N
AMEM003406 Anopheles merus AMEM003406 N
AQUA000258 Anopheles quadriannulatus AQUA000258 N
AQUA010448 Anopheles quadriannulatus AQUA010448 N
ASIS022478 Anopheles sinensis ASIS022478 N
ASTEI08594 Anopheles stephensi ASTEI08594 N
ACEP18776 Atta cephalotes ACEP18776 N
BGLB004779 Biomphalaria glabrata BGLB004779 N
BGLB006532 Biomphalaria glabrata BGLB006532 N
BGIBMGA012897 Bombyx mori BGIBMGA012897 N
TBR1 Choloepus hoffmanni ENSCHOG00000006154 N
CpipJ_CPIJ000432 Culex pipiens CpipJ_CPIJ000432 N
CPIJ000432 Culex quinquefasciatus CPIJ000432 N
KGM_15499 Danaus plexippus KGM_15499 N
DILT_0001817101 Diphyllobothrium latum DILT_0001817101 N
GG18705 Drosophila erecta FBgn0110914 N
GD16690 Drosophila simulans FBgn0188279 N
EEL_0000897001 Elaeophora elaphi EEL_0000897001 N
GPUH_0000570001 Gongylonema pulchrum GPUH_0000570001 N
GPUH_0000522701 Gongylonema pulchrum GPUH_0000522701 N
Hsal_09267--XP_394607.3_APIME Harpegnathos saltator Hsal_09267--XP_394607.3_APIME N
HelroG92844 Helobdella robusta HelroG92844 N
ENSLACG00000004796 Latimeria chalumnae ENSLACG00000004796 N
nLs.2.1.2.g03987 Litomosoides sigmodontis nLs.2.1.2.g03987 N
LLOJ003748 Lutzomyia longipalpis LLOJ003748 N
NEMVEDRAFT_v1g57075 Nematostella vectensis NEMVEDRAFT_v1g57075 N
Ocbimv22001570m.g Octopus bimaculoides Ocbimv22001570m.g N
SNAPOd2T00025689001 Oikopleura dioica SNAPOd2T00025689001 N
nOo.2.0.1.g11026 Onchocerca ochengi nOo.2.0.1.g11026 N
nOo.2.0.1.g05407 Onchocerca ochengi nOo.2.0.1.g05407 N
ENSOANG00000030458 Ornithorhynchus anatinus ENSOANG00000030458 N
PEQ_0000369901 Parascaris equorum PEQ_0000369901 N
PPAI002081 Phlebotomus papatasi PPAI002081 N
PPAI007558 Phlebotomus papatasi PPAI007558 N
PXEA_0002770801 Protopolystoma xenopodis PXEA_0002770801 N
PXEA_0001168701 Protopolystoma xenopodis PXEA_0001168701 N
PXEA_0000565701 Protopolystoma xenopodis PXEA_0000565701 N
RPRC007267 Rhodnius prolixus RPRC007267 N
SSLN_0000607001 Schistocephalus solidus SSLN_0000607001 N
SMRZ_0000684401 Schistosoma margrebowiei SMRZ_0000684401 N
SMTD_0001338101 Schistosoma mattheei SMTD_0001338101 N
SINV19991 Solenopsis invicta SINV19991 N
SINV17864 Solenopsis invicta SINV17864 N
SINV10896 Solenopsis invicta SINV10896 N
ENSSARG00000001033 Sorex araneus ENSSARG00000001033 I
SPER_0003400201 Spirometra erinaceieuropaei SPER_0003400201 N
TsM_000048500 Taenia solium TsM_000048500 N
ENSTSYG00000002965 Tarsius syrichta ENSTSYG00000002965 I
TRE_0001960401 Trichobilharzia regenti TRE_0001960401 N
TBX19 Tupaia belangeri ENSTBEG00000000750 N
WUBG_08150 Wuchereria bancrofti WUBG_08150 N
L798_14237 Zootermopsis nevadensis L798_14237 N