CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra013076
(
Brassica rapa
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
Bra013076
T205088_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATH1
M10627_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATH1_01
0.826
0.696
Q5EVH4_OIKDI
M02227_2.00
Oikopleura dioica
NTGACAKN
NMTGTCAN
PBM
Weirauch et al.(2014)
pTH6041
0.626
0.565
MEIS3
M03093_2.00
Homo sapiens
DTGACANN
NNTGTCAH
SELEX
Jolma et al.(2013)
MEIS3_1
0.618
0.435
MEIS3
M03094_2.00
Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA
SELEX
Jolma et al.(2013)
MEIS3_2
0.618
0.435
MEIS3
M04951_2.00
Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA
SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX
0.618
0.435
MEIS3
M04952_2.00
Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR
SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX
0.618
0.435
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra013076.1-P
Homeodomain
289
337
VLILRAWLFEHFLHPYPKDSDKIMLARQTGLSRGQVSNWFINARVRLWK
Links
Other
Homeodomain
family TFs
Other
Brassica rapa
TFs
1012 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCDUO_08931
Ancylostoma duodenale
ANCDUO_08931
N
ENSACAG00000021966
Anolis carolinensis
ENSACAG00000021966
N
AALB008494
Anopheles albimanus
AALB008494
N
AARA000519
Anopheles arabiensis
AARA000519
N
AARA011012
Anopheles arabiensis
AARA011012
N
AATE002306
Anopheles atroparvus
AATE002306
N
ACUA015629
Anopheles culicifacies
ACUA015629
N
ADAC003415
Anopheles darlingi
ADAC003415
N
ADIR000206
Anopheles dirus
ADIR000206
N
ADIR010893
Anopheles dirus
ADIR010893
N
AEPI004512
Anopheles epiroticus
AEPI004512
N
AFAF003029
Anopheles farauti
AFAF003029
N
AFUN010566
Anopheles funestus
AFUN010566
N
AGAP011711
Anopheles gambiae
AGAP011711
N
AMEC008583
Anopheles melas
AMEC008583
N
AMEM003406
Anopheles merus
AMEM003406
N
AQUA000258
Anopheles quadriannulatus
AQUA000258
N
AQUA010448
Anopheles quadriannulatus
AQUA010448
N
ASIS022478
Anopheles sinensis
ASIS022478
N
ASTEI08594
Anopheles stephensi
ASTEI08594
N
ACEP18776
Atta cephalotes
ACEP18776
N
BGLB004779
Biomphalaria glabrata
BGLB004779
N
BGLB006532
Biomphalaria glabrata
BGLB006532
N
BGIBMGA012897
Bombyx mori
BGIBMGA012897
N
TBR1
Choloepus hoffmanni
ENSCHOG00000006154
N
CpipJ_CPIJ000432
Culex pipiens
CpipJ_CPIJ000432
N
CPIJ000432
Culex quinquefasciatus
CPIJ000432
N
KGM_15499
Danaus plexippus
KGM_15499
N
DILT_0001817101
Diphyllobothrium latum
DILT_0001817101
N
GG18705
Drosophila erecta
FBgn0110914
N
GD16690
Drosophila simulans
FBgn0188279
N
EEL_0000897001
Elaeophora elaphi
EEL_0000897001
N
GPUH_0000570001
Gongylonema pulchrum
GPUH_0000570001
N
GPUH_0000522701
Gongylonema pulchrum
GPUH_0000522701
N
Hsal_09267--XP_394607.3_APIME
Harpegnathos saltator
Hsal_09267--XP_394607.3_APIME
N
HelroG92844
Helobdella robusta
HelroG92844
N
ENSLACG00000004796
Latimeria chalumnae
ENSLACG00000004796
N
nLs.2.1.2.g03987
Litomosoides sigmodontis
nLs.2.1.2.g03987
N
LLOJ003748
Lutzomyia longipalpis
LLOJ003748
N
NEMVEDRAFT_v1g57075
Nematostella vectensis
NEMVEDRAFT_v1g57075
N
Ocbimv22001570m.g
Octopus bimaculoides
Ocbimv22001570m.g
N
SNAPOd2T00025689001
Oikopleura dioica
SNAPOd2T00025689001
N
nOo.2.0.1.g11026
Onchocerca ochengi
nOo.2.0.1.g11026
N
nOo.2.0.1.g05407
Onchocerca ochengi
nOo.2.0.1.g05407
N
ENSOANG00000030458
Ornithorhynchus anatinus
ENSOANG00000030458
N
PEQ_0000369901
Parascaris equorum
PEQ_0000369901
N
PPAI002081
Phlebotomus papatasi
PPAI002081
N
PPAI007558
Phlebotomus papatasi
PPAI007558
N
PXEA_0002770801
Protopolystoma xenopodis
PXEA_0002770801
N
PXEA_0001168701
Protopolystoma xenopodis
PXEA_0001168701
N
PXEA_0000565701
Protopolystoma xenopodis
PXEA_0000565701
N
RPRC007267
Rhodnius prolixus
RPRC007267
N
SSLN_0000607001
Schistocephalus solidus
SSLN_0000607001
N
SMRZ_0000684401
Schistosoma margrebowiei
SMRZ_0000684401
N
SMTD_0001338101
Schistosoma mattheei
SMTD_0001338101
N
SINV19991
Solenopsis invicta
SINV19991
N
SINV17864
Solenopsis invicta
SINV17864
N
SINV10896
Solenopsis invicta
SINV10896
N
ENSSARG00000001033
Sorex araneus
ENSSARG00000001033
I
SPER_0003400201
Spirometra erinaceieuropaei
SPER_0003400201
N
TsM_000048500
Taenia solium
TsM_000048500
N
ENSTSYG00000002965
Tarsius syrichta
ENSTSYG00000002965
I
TRE_0001960401
Trichobilharzia regenti
TRE_0001960401
N
TBX19
Tupaia belangeri
ENSTBEG00000000750
N
WUBG_08150
Wuchereria bancrofti
WUBG_08150
N
L798_14237
Zootermopsis nevadensis
L798_14237
N