Bra017720 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra017720 T205110_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WOX13
M02049_2.00 		Arabidopsis thaliana
YTGATTGA
TCAATCAR		 PBM
Weirauch et al.(2014)
pTH6461 		0.833 0.947
WOX13
M00866_2.00 		Arabidopsis thaliana
NNTGATTGAN
NTCAATCANN		 PBM
Franco-Zorrilla et al.(2014)
WOX13 		0.833 0.947
GRMZM2G038252
M02137_2.00 		Zea mays
HTRATTGV
BCAATYAD		 PBM
Weirauch et al.(2014)
pTH6141 		0.820 0.807
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra017720.1-P Homeodomain 91 152

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

343 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g03640 Acanthocheilonema viteae nAv.1.0.1.g03640 N 0.000
AAEL003558 Aedes aegypti AAEL003558 N 0.000
ANCCAN_02501 Ancylostoma caninum ANCCAN_02501 N 0.000
ANCCEY_04498 Ancylostoma ceylanicum ANCCEY_04498 N 0.000
ANCDUO_01800 Ancylostoma duodenale ANCDUO_01800 N 0.000
ASIM_0001023101 Anisakis simplex ASIM_0001023101 N 0.000
AARA001118 Anopheles arabiensis AARA001118 N 0.000
AATE005200 Anopheles atroparvus AATE005200 N 0.000
ACHR008953 Anopheles christyi ACHR008953 N 0.000
ACOM027781 Anopheles coluzzii ACOM027781 N 0.000
AMAM012119 Anopheles maculatus AMAM012119 N 0.000
AMEC001472 Anopheles melas AMEC001472 N 0.000
AMEM006409 Anopheles merus AMEM006409 N 0.000
AQUA008305 Anopheles quadriannulatus AQUA008305 N 0.000
ALUE_0000523001 Ascaris lumbricoides ALUE_0000523001 N 0.000
BGLB003107 Biomphalaria glabrata BGLB003107 N 0.000
Bm12962 Brugia malayi Bm12962 N 0.000
BTMF_0000819101 Brugia timori BTMF_0000819101 N 0.000
BXY_0681200 Bursaphelenchus xylophilus BXY_0681200 N 0.000
CBN28537 Caenorhabditis brenneri CBN28537 N 0.000
CBN28364 Caenorhabditis brenneri CBN28364 N 0.000
CBG25174 Caenorhabditis briggsae CBG25174 N 0.000
CJA40030 Caenorhabditis japonica CJA40030 N 0.000
CJA30884 Caenorhabditis japonica CJA30884 N 0.000
CapteG215623 Capitella teleta CapteG215623 N 0.000
CGI_10012805 Crassostrea gigas CGI_10012805 N 0.000
CpipJ_CPIJ018552 Culex pipiens CpipJ_CPIJ018552 N 0.000
CpipJ_CPIJ006385 Culex pipiens CpipJ_CPIJ006385 N 0.000
CPIJ018552 Culex quinquefasciatus CPIJ018552 N 0.000
CPIJ006385 Culex quinquefasciatus CPIJ006385 N 0.000
CGOC_0000560601 Cylicostephanus goldi CGOC_0000560601 N 0.000
DICVIV_09521 Dictyocaulus viviparus DICVIV_09521 N 0.000
nDi.2.2.2.g01975 Dirofilaria immitis nDi.2.2.2.g01975 N 0.000
GM26798 Drosophila sechellia FBgn0181651 N 0.000
EEL_0000436501 Elaeophora elaphi EEL_0000436501 N 0.000
HPLM_0001120601 Haemonchus placei HPLM_0001120601 N 0.000
HPBE_0001925501 Heligmosomoides bakeri HPBE_0001925501 N 0.000
HelroG184094 Helobdella robusta HelroG184094 N 0.000
Hba_16068 Heterorhabditis bacteriophora Hba_16068 N 0.000
nLs.2.1.2.g02280 Litomosoides sigmodontis nLs.2.1.2.g02280 N 0.000
LOAG_18302 Loa loa LOAG_18302 N 0.000
LCUP009926 Lucilia cuprina LCUP009926 N 0.000
MESCA003372 Megaselia scalaris MESCA003372 N 0.000
augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00776-processed-gene-0.0 N 0.000
OFLC_0001322801 Onchocerca flexuosa OFLC_0001322801 N 0.000
nOo.2.0.1.g06917 Onchocerca ochengi nOo.2.0.1.g06917 N 0.000
nOo.2.0.1.g07994 Onchocerca ochengi nOo.2.0.1.g07994 N 0.000
WBGene00237282 Onchocerca volvulus WBGene00237282 N 0.000
PEQ_0000886501 Parascaris equorum PEQ_0000886501 N 0.000
scaffold58-EXSNAP2012.11 Pristionchus exspectatus scaffold58-EXSNAP2012.11 N 0.000
PPA09748 Pristionchus pacificus PPA09748 N 0.000
RPRC014602 Rhodnius prolixus RPRC014602 N 0.000
L893_g14196 Steinernema glaseri L893_g14196 N 0.000
L898_g11712 Steinernema monticolum L898_g11712 N 0.000
SVE_1689300 Strongyloides venezuelensis SVE_1689300 N 0.000
TELCIR_13776 Teladorsagia circumcincta TELCIR_13776 N 0.000
TCLT_0000816701 Thelazia callipaeda TCLT_0000816701 N 0.000
TCNE_0000027001 Toxocara canis TCNE_0000027001 N 0.000
EFV52452 Trichinella spiralis EFV52452 N 0.000
D918_05751 Trichuris suis D918_05751 N 0.000
TTRE_0000249801 Trichuris trichiura TTRE_0000249801 N 0.000
WUBG_04923 Wuchereria bancrofti WUBG_04923 N 0.000