Bra023506 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra023506 T205131_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.861 0.929
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.861 0.929
ATHB-20
M06912_2.00 		Arabidopsis thaliana
HYAATAATTRD
HYAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_col_a 		0.845 0.929
ATHB-20
M06913_2.00 		Arabidopsis thaliana
HYAATMATTRD
HYAATKATTRD		 Dap-seq
OMalley et al.(2016)
ATHB20_colamp_a 		0.845 0.929
ATHB-13
M06900_2.00 		Arabidopsis thaliana
HYAATAATTDD
HHAATTATTRD		 Dap-seq
OMalley et al.(2016)
ATHB13_col_a 		0.723 0.893
ATHB-13
M06901_2.00 		Arabidopsis thaliana
NYAATAATTRW
WYAATTATTRN		 Dap-seq
OMalley et al.(2016)
ATHB13_colamp_a 		0.723 0.893
ATHB-51
M00867_2.00 		Arabidopsis thaliana
ATWATKNN
NNMATWAT		 PBM
Franco-Zorrilla et al.(2014)
ATHB51 		0.711 0.607
ATHB-51
M06927_2.00 		Arabidopsis thaliana
DNCAATAATTGAD
HTCAATTATTGNH		 Dap-seq
OMalley et al.(2016)
LMI1_col_a 		0.711 0.607
ATHB-51
M06928_2.00 		Arabidopsis thaliana
NDNCAATAATTGA
TCAATTATTGNHN		 Dap-seq
OMalley et al.(2016)
LMI1_colamp_a 		0.711 0.607
ATHB-22
M02041_2.00 		Arabidopsis thaliana
NNATAATWWWNNN
NNNWWWATTATNN		 PBM
Weirauch et al.(2014)
pTH5883 		0.708 0.625
estExt_gwp_gw1.C_70211
M02220_2.00 		Physcomitrella patens
HMATNANDNN
NNHNTNATKD		 PBM
Weirauch et al.(2014)
pTH8489 		0.694 0.821
ATHB-5
M06932_2.00 		Arabidopsis thaliana
NYAATMATTND
HNAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_col_a 		0.675 0.786
ATHB-5
M06933_2.00 		Arabidopsis thaliana
NYAATMATTN
NAATKATTRN		 Dap-seq
OMalley et al.(2016)
ATHB5_colamp_a 		0.675 0.786
ATHB-5
M02684_2.00 		Arabidopsis thaliana
CAATVATTGVVSV
BSBBCAATBATTG		 SELEX
Mathelier et al.(2014)
MA0110.2 		0.675 0.786
ATHB-5
M10630_2.00 		Arabidopsis thaliana
CAATVATTG
CAATBATTG		 Transfac
Matys et al.(2006)
P$ATHB5_01 		0.675 0.786
ATHB-6
M02040_2.00 		Arabidopsis thaliana
HATNATTDN
NHAATNATD		 PBM
Weirauch et al.(2014)
pTH7670 		0.662 0.768
ATHB-16
M02050_2.00 		Arabidopsis thaliana
YAATMATT
AATKATTR		 PBM
Weirauch et al.(2014)
pTH7270 		0.662 0.768
ATHB-6
M06909_2.00 		Arabidopsis thaliana
NNNHATKATTR
YAATMATDNNN		 Dap-seq
OMalley et al.(2016)
ATHB6_col_a 		0.662 0.768
ATHB-6
M06910_2.00 		Arabidopsis thaliana
NCAATAATTRN
NYAATTATTGN		 Dap-seq
OMalley et al.(2016)
ATHB6_colamp_a 		0.662 0.768
HAT5
M06914_2.00 		Arabidopsis thaliana
NHAATAATTDW
WHAATTATTDN		 Dap-seq
OMalley et al.(2016)
HAT5_col_a 		0.657 0.804
HAT5
M06915_2.00 		Arabidopsis thaliana
WNYAATAATTRWDN
NHWYAATTATTRNW		 Dap-seq
OMalley et al.(2016)
HAT5_colamp_a 		0.657 0.804
HAT5
M02683_2.00 		Arabidopsis thaliana
SCAATAATTNNV
BNNAATTATTGS		 SELEX
Mathelier et al.(2014)
MA0008.2 		0.657 0.804
HAT5
M10624_2.00 		Arabidopsis thaliana
YSCAATAATTNNVN
NBNNAATTATTGSR		 Transfac
Matys et al.(2006)
P$ATHB1_01 		0.657 0.804
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.617 0.589
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.617 0.589
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.606 0.518
ATHB-21
M06907_2.00 		Arabidopsis thaliana
NNWHCAATWATTDN
NHAATWATTGDWNN		 Dap-seq
OMalley et al.(2016)
ATHB21_col_a 		0.600 0.643
ATHB-21
M06908_2.00 		Arabidopsis thaliana
WWDDNNNHAATWATTGDTNN
NNAHCAATWATTDNNNHHWW		 Dap-seq
OMalley et al.(2016)
ATHB21_colamp_a 		0.600 0.643
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023506.1-P Homeodomain 92 147

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

786 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_067850 Acremonium chrysogenum ACRE_067850 I 0.000
AB06533.1 Alternaria brassicicola AB06533.1 N 0.000
M437DRAFT_67933 Aureobasidium melanogenum M437DRAFT_67933 I 0.000
M438DRAFT_155623 Aureobasidium pullulans M438DRAFT_155623 I 0.000
AUEXF2481DRAFT_374368 Aureobasidium subglaciale AUEXF2481DRAFT_374368 I 0.000
BBA_09189 Beauveria bassiana BBA_09189 I 0.000
COCC4DRAFT_46985 Bipolaris maydis COCC4DRAFT_46985 N 0.000
COCMIDRAFT_8999 Bipolaris oryzae COCMIDRAFT_8999 N 0.000
COCSADRAFT_25239 Bipolaris sorokiniana COCSADRAFT_25239 N 0.000
COCVIDRAFT_37014 Bipolaris victoriae COCVIDRAFT_37014 N 0.000
COCCADRAFT_82274 Bipolaris zeicola COCCADRAFT_82274 N 0.000
BGHDH14_bgh05094 Blumeria graminis BGHDH14_bgh05094 I 0.000
PVAR5_1180 Byssochlamys spectabilis PVAR5_1180 I 0.000
CHGG_07364 Chaetomium globosum CHGG_07364 I 0.000
CTHT_0068480 Chaetomium thermophilum CTHT_0068480 I 0.000
CPUR_08028 Claviceps purpurea CPUR_08028 I 0.000
estExt_fgenesh1_pg.C_40234 Cochliobolus heterostrophus C5 estExt_fgenesh1_pg.C_40234 N 0.000
CFIO01_10198 Colletotrichum fioriniae CFIO01_10198 I 0.000
GLRG_01145 Colletotrichum graminicola GLRG_01145 I 0.000
CH063_08735 Colletotrichum higginsianum CH063_08735 I 0.000
CSUB01_05898 Colletotrichum sublineola CSUB01_05898 I 0.000
CCM_09080 Cordyceps militaris CCM_09080 I 0.000
estExt_Genewise1Plus.C_13371 Cryphonectria parasitica estExt_Genewise1Plus.C_13371 I 0.000
DOTSEDRAFT_68376 Dothistroma septosporum DOTSEDRAFT_68376 I 0.000
UCREL1_10245 Eutypa lata UCREL1_10245 I 0.000
NechaG22260 Fusarium solani NechaG22260 I 0.000
GGTG_06006 Gaeumannomyces graminis GGTG_06006 I 0.000
CMQ_7699 Grosmannia clavigera CMQ_7699 I 0.000
LEMA_P115290.1 Leptosphaeria maculans LEMA_P115290.1 N 0.000
MPH_08875 Macrophomina phaseolina MPH_08875 N 0.000
MGG_05343 Magnaporthe oryzae MGG_05343 I 0.000
MAPG_04263 Magnaporthe poae MAPG_04263 I 0.000
MAC_05572 Metarhizium acridum MAC_05572 I 0.000
MAM_04875 Metarhizium album MAM_04875 I 0.000
MANI_011912 Metarhizium anisopliae MANI_011912 I 0.000
MBR_05015 Metarhizium brunneum MBR_05015 I 0.000
MGU_01655 Metarhizium guizhouense MGU_01655 I 0.000
MAJ_06898 Metarhizium majus MAJ_06898 I 0.000
X797_001512 Metarhizium robertsii X797_001512 I 0.000
MYCTH_2301920 Myceliophthora thermophila MYCTH_2301920 I 0.000
estExt_fgenesh1_pg.C_chr_10960 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_10960 I 0.000
gw1.14.468.1 Nectria haematococca gw1.14.468.1 I 0.000
UCRNP2_458 Neofusicoccum parvum UCRNP2_458 N 0.000
col-26 Neurospora crassa NCU07788 D 0.000
estExt_Genewise1Plus.C_140234 Neurospora discreta estExt_Genewise1Plus.C_140234 I 0.000
NEUTE1DRAFT_59081 Neurospora tetrasperma NEUTE1DRAFT_59081 I 0.000
OCS_01944 Ophiocordyceps sinensis OCS_01944 I 0.000
F503_04220 Ophiostoma piceae uamh F503_04220 I 0.000
PFICI_10998 Pestalotiopsis fici PFICI_10998 I 0.000
PODANS_2_4060 Podospora anserina PODANS_2_4060 I 0.000
MYCFIDRAFT_127068 Pseudocercospora fijiensis MYCFIDRAFT_127068 I 0.000
GMDG_01905 Pseudogymnoascus destructans GMDG_01905 I 0.000
V499_05963 Pseudogymnoascus pannorum V499_05963 I 0.000
PTT_02079 Pyrenophora teres PTT_02079 N 0.000
SAPIO_CDS0393 Scedosporium apiospermum SAPIO_CDS0393 I 0.000
SETTUDRAFT_174289 Setosphaeria turcica SETTUDRAFT_174289 N 0.000
SMAC_08231 Sordaria macrospora SMAC_08231 I 0.000
SEPMUDRAFT_146091 Sphaerulina musiva SEPMUDRAFT_146091 I 0.000
S40288_01569 Stachybotrys chartarum S40288_01569 I 0.000
S40285_00097 Stachybotrys chlorohalonata S40285_00097 I 0.000
THITE_2108095 Thielavia terrestris THITE_2108095 I 0.000
VHEMI08540 Torrubiella hemipterigena VHEMI08540 I 0.000
TRIATDRAFT_11573 Trichoderma atroviride TRIATDRAFT_11573 I 0.000
TRIREDRAFT_52368 Trichoderma reesei TRIREDRAFT_52368 I 0.000
TRIVIDRAFT_156582 Trichoderma virens TRIVIDRAFT_156582 I 0.000
UV8b_5300 Ustilaginoidea virens UV8b_5300 I 0.000
PV09_00811 Verruconis gallopava PV09_00811 N 0.000
VDBG_09402 Verticillium albo atrum VDBG_09402 I 0.000
VDBG_09402 Verticillium alfalfae VDBG_09402 I 0.000
VDAG_04640 Verticillium dahliae VDAG_04640 I 0.000
Mycgr3G107320 Zymoseptoria tritici Mycgr3G107320 I 0.000