Bra025758 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra025758 T205143_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.780 0.694
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.636 0.571
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.611 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.611 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.611 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.611 0.429
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.601 0.449
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.601 0.429
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.600 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra025758.1-P Homeodomain 226 277

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACRE_016450 Acremonium chrysogenum ACRE_016450 N 0.000
BBA_07446 Beauveria bassiana BBA_07446 N 0.000
CPUR_08686 Claviceps purpurea CPUR_08686 N 0.000
CFIO01_10250 Colletotrichum fioriniae CFIO01_10250 N 0.000
CGGC5_3246 Colletotrichum gloeosporioides CGGC5_3246 N 0.000
GLRG_05436 Colletotrichum graminicola GLRG_05436 N 0.000
CH063_06226 Colletotrichum higginsianum CH063_06226 N 0.000
Cob_01104 Colletotrichum orbiculare Cob_01104 N 0.000
CSUB01_00584 Colletotrichum sublineola CSUB01_00584 N 0.000
W97_07908 Coniosporium apollinis W97_07908 N 0.000
CCM_05113 Cordyceps militaris CCM_05113 N 0.000
FFUJ_04361 Fusarium fujikuroi FFUJ_04361 I 0.000
FGRRES_09495 Fusarium graminearum FGRRES_09495 N 0.000
FOXG_06191 Fusarium oxysporum FOXG_06191 I 0.000
FPSE_10753 Fusarium pseudograminearum FPSE_10753 N 0.000
NechaG32416 Fusarium solani NechaG32416 N 0.000
FVEG_04045 Fusarium verticillioides FVEG_04045 I 0.000
MPH_11315 Macrophomina phaseolina MPH_11315 N 0.000
MGG_02493 Magnaporthe oryzae MGG_02493 N 0.000
MAC_02687 Metarhizium acridum MAC_02687 N 0.000
MAM_02840 Metarhizium album MAM_02840 N 0.000
MANI_018633 Metarhizium anisopliae MANI_018633 N 0.000
MBR_02416 Metarhizium brunneum MBR_02416 N 0.000
MGU_00595 Metarhizium guizhouense MGU_00595 N 0.000
MAJ_00221 Metarhizium majus MAJ_00221 N 0.000
X797_000454 Metarhizium robertsii X797_000454 N 0.000
e_gw1.18.1597.1 Nectria haematococca e_gw1.18.1597.1 N 0.000
UCRNP2_9340 Neofusicoccum parvum UCRNP2_9340 N 0.000
GMDG_01999 Pseudogymnoascus destructans GMDG_01999 N 0.000
V499_03352 Pseudogymnoascus pannorum V499_03352 N 0.000
SAPIO_CDS8133 Scedosporium apiospermum SAPIO_CDS8133 N 0.000
S40288_07815 Stachybotrys chartarum S40288_07815 N 0.000
S40285_04138 Stachybotrys chlorohalonata S40285_04138 N 0.000
UCRPA7_784 Togninia minima UCRPA7_784 N 0.000
VHEMI06672 Torrubiella hemipterigena VHEMI06672 N 0.000
TRIATDRAFT_212147 Trichoderma atroviride TRIATDRAFT_212147 N 0.000
TRIREDRAFT_57100 Trichoderma reesei TRIREDRAFT_57100 N 0.000
UV8b_863 Ustilaginoidea virens UV8b_863 N 0.000
PV09_04501 Verruconis gallopava PV09_04501 N 0.000
VDBG_07957 Verticillium albo atrum VDBG_07957 I 0.000
VDBG_07957 Verticillium alfalfae VDBG_07957 I 0.000
VDAG_05527 Verticillium dahliae VDAG_05527 I 0.000