CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

BRADI1G73190 *(Brachypodium distachyon)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	BRADI1G73190	T205221_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.861	0.911
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.861	0.911
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.829	0.821
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.817	0.839
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.817	0.839
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.817	0.839
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.817	0.839
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.804	0.821
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.800	0.804
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.800	0.804
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.800	0.804
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.796	0.804
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.796	0.804
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.796	0.804
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.796	0.804
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.738	0.661
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.738	0.661
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.736	0.625
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.736	0.625
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.731	0.589
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.731	0.589
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.719	0.857
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.719	0.857
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.703	0.821
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.703	0.821
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.600	0.625
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.600	0.625
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
BRADI1G73190.1	Homeodomain	115	170	EKKRRLNVEQVRTLEKNFELANKLEPERKIQLARALGLQPRQVAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Brachypodium distachyon* TFs

819 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aquca_021_00051	Aquilegia coerulea	Aquca_021_00051	I	0.000
ANAC083	Arabidopsis lyrata	scaffold_601328.1	I	0.000
NAC083	Arabidopsis thaliana	AT5G13180	D	0.000
Bostr.2902s0053	Boechera stricta	Bostr.2902s0053	I	0.000
Bo2g011120	Brassica oleracea	Bo2g011120	I	0.000
Bo3g009040	Brassica oleracea	Bo3g009040	I	0.000
Bo4g181990	Brassica oleracea	Bo4g181990	I	0.000
Bo9g168950	Brassica oleracea	Bo9g168950	I	0.000
Bra006186	Brassica rapa	Bra006186	I	0.000
Bra008849	Brassica rapa	Bra008849	I	0.000
Bra021856	Brassica rapa	Bra021856	I	0.000
Bra023395	Brassica rapa	Bra023395	I	0.000
PK12461.1	Cannabis sativa	PK12461.1	I	0.000
Cagra.0596s0010	Capsella grandiflora	Cagra.0596s0010	I	0.000
Carubv10002548m.g	Capsella rubella	Carubv10002548m.g	I	0.000
evm.TU.supercontig_4.138	Carica papaya	evm.TU.supercontig_4.138	N	0.000
Cla001517	Citrullus lanatus	Cla001517	I	0.000
Cla011059	Citrullus lanatus	Cla011059	I	0.000
Ciclev10032547m.g	Citrus clementina	Ciclev10032547m.g	I	0.000
orange1.1g030727m.g	Citrus sinensis	orange1.1g030727m.g	I	0.000
Cucsa.095210	Cucumis sativus	Cucsa.095210	N	0.000
Cucsa.349370	Cucumis sativus	Cucsa.349370	I	0.000
Eucgr.H03387	Eucalyptus grandis	Eucgr.H03387	I	0.000
Eucgr.B03537	Eucalyptus grandis	Eucgr.B03537	I	0.000
Thhalv10017152m.g	Eutrema salsugineum	Thhalv10017152m.g	I	0.000
GLYMA18G53954	Glycine max	GLYMA18G53954	I	0.000
GLYMA08G47520	Glycine max	GLYMA08G47520	I	0.000
Gorai.012G125500	Gossypium raimondii	Gorai.012G125500	I	0.000
Gorai.005G195300	Gossypium raimondii	Gorai.005G195300	I	0.000
MDP0000130123	Malus domestica	MDP0000130123	I	0.000
MDP0000126517	Malus domestica	MDP0000126517	I	0.000
cassava12891.valid.m1	Manihot esculenta	cassava12891.valid.m1	I	0.000
cassava1138.valid.m1	Manihot esculenta	cassava1138.valid.m1	I	0.000
GSMUA_Achr10G11910_001	Musa acuminata	GSMUA_Achr10G11910_001	N	0.000
POPTR_0003s16490	Populus trichocarpa	POPTR_0003s16490	I	0.000
POPTR_0001s13380	Populus trichocarpa	POPTR_0001s13380	I	0.000
Pm007070	Prunus mume	Pm007070	I	0.000
PRUPE_ppa010222mg	Prunus persica	PRUPE_ppa010222mg	I	0.000
30128.m009035	Ricinus communis	30128.m009035	I	0.000
30147.m014441	Ricinus communis	30147.m014441	N	0.000
SapurV1A.0173s0020	Salix purpurea	SapurV1A.0173s0020	I	0.000
SapurV1A.0453s0210	Salix purpurea	SapurV1A.0453s0210	I	0.000
TCM_008477	Theobroma cacao	TCM_008477	I	0.000
ANAC083	Vitis vinifera	VIT_01s0146g00280	I	0.000

BRADI1G73190 (Brachypodium distachyon) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

819 Related TFs

BRADI1G73190 **(Brachypodium distachyon)
Homeodomain**