CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

CGI_10021129 *(Crassostrea gigas)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	CGI_10021129	T205865_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ceh-24 M02181_2.00	Caenorhabditis elegans	NNRAKWRNN	NNYWMTYNN	PBM Weirauch et al.(2014) pTH6327	0.853	0.895
Nkx2-1 M00385_2.00	Mus musculus	NNRAGDRN	NYHCTYNN	PBM Berger et al.(2008) Titf1_1722	0.849	0.965
Nkx2-4 M00514_2.00	Mus musculus	NNRAGDRBNN	NNVYHCTYNN	PBM Berger et al.(2008) Nkx2-4_3074	0.849	0.965
NKX2-1 M09146_2.00	Homo sapiens	BTKGAGWGBN	NVCWCTCMAV	Misc Kulakovskiy et al.(2013) NKX21_HUMAN.H11MO.0.A	0.849	0.965
Nkx2-1 M09171_2.00	Mus musculus	NBTKGAGWGB	VCWCTCMAVN	Misc Kulakovskiy et al.(2013) NKX21_MOUSE.H11MO.0.A	0.849	0.965
Nkx2-1 M09563_2.00	Mus musculus	BTBRAGWGBH	DVCWCTYVAV	Misc Heinz et al.(2010) LungAC-Nkx2.1_GSE43252	0.849	0.965
NKX2-1 M10694_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TITF1_Q3	0.849	0.965
NKX2-1 M10695_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q5_01	0.849	0.965
NKX2-1 M10696_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q5	0.849	0.965
NKX2-1 M10697_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$TTF1_Q6	0.849	0.965
scro M03854_2.00	Drosophila melanogaster	NNBRMGTGB	VCACKYVNN	SELEX Nitta et al.(2015) scro_1	0.848	0.930
NKX2-5 M00323_2.00	Homo sapiens	NWYAAGTGSNN	NNSCACTTRWN	PBM Barrera et al.(2016) NKX2-5_REF	0.803	0.842
Nkx2-5 M00404_2.00	Mus musculus	NNNRAGDRBN	NVYHCTYNNN	PBM Berger et al.(2008) Nkx2-5_3436	0.803	0.842
NKX2-5 M05346_2.00	Homo sapiens	BHYAAGTGBN	NVCACTTRDV	SELEX Yin et al.(2017) NKX2-5_FL_HT-SELEX	0.803	0.842
Nkx2-5 M02686_2.00	Mus musculus	WTAAKWK	MWMTTAW	SELEX Mathelier et al.(2014) MA0063.1	0.803	0.842
Nkx2-5 M08136_2.00	Mus musculus	SYTGAGWGSYH	DRSCWCTCARS	ChIP-seq Mathelier et al.(2014) MA0503.1	0.803	0.842
NKX2-5 M09163_2.00	Homo sapiens	BKRAGWGV	BCWCTYMV	Misc Kulakovskiy et al.(2013) NKX25_HUMAN.H11MO.0.B	0.803	0.842
Nkx2-5 M09177_2.00	Mus musculus	NBYBRAGTGS	SCACTYVRVN	Misc Kulakovskiy et al.(2013) NKX25_MOUSE.H11MO.0.A	0.803	0.842
Nkx2-5 M09567_2.00	Mus musculus	HBRAGWGBNN	NNVCWCTYVD	Misc Heinz et al.(2010) HL1-Nkx2.5.biotin_GSE21529	0.803	0.842
NKX2-5 M10742_2.00	Homo sapiens	TYAAGTG	CACTTRA	Transfac Matys et al.(2006) V$NKX25_01	0.803	0.842
NKX2-5 M10743_2.00	Homo sapiens	CWTAATTV	BAATTAWG	Transfac Matys et al.(2006) V$NKX25_02	0.803	0.842
NKX2-5 M10744_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX25_Q5	0.803	0.842
NKX2-5 M10745_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX25_Q6	0.803	0.842
NKX2-5 M00321_2.00	Homo sapiens	HNAAGTRBNN	NNVYACTTND	PBM Barrera et al.(2016) NKX2-5_R161P	0.803	0.842
NKX2-5 M05347_2.00	Homo sapiens	BTYAAGTGGN	NCCACTTRAV	SELEX Yin et al.(2017) NKX2-5_FL_Methyl-HT-SELEX_1	0.803	0.842
NKX2-5 M05348_2.00	Homo sapiens	BTYAACGAB	VTCGTTRAV	SELEX Yin et al.(2017) NKX2-5_FL_Methyl-HT-SELEX_2	0.803	0.842
NKX2-5 M00322_2.00	Homo sapiens	NNNRNNN	NNNYNNN	PBM Barrera et al.(2016) NKX2-5_R190C	0.803	0.825
NKX2-5 M00324_2.00	Homo sapiens	NHNNNNN	NNNNNDN	PBM Barrera et al.(2016) NKX2-5_T178M	0.803	0.825
Nkx2-3 M00497_2.00	Mus musculus	NNRAGDRNN	NNYHCTYNN	PBM Berger et al.(2008) Nkx2-3_3435	0.801	0.860
NKX2-3 M05042_2.00	Homo sapiens	NNBAAGTGBN	NVCACTTVNN	SELEX Yin et al.(2017) NKX2-3_eDBD_HT-SELEX	0.801	0.860
NKX2-3 M05045_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_FL_HT-SELEX	0.801	0.860
NKX2-3 M05043_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_eDBD_Methyl-HT-SELEX_1	0.801	0.860
NKX2-3 M05044_2.00	Homo sapiens	SDYAACGHB	VDCGTTRHS	SELEX Yin et al.(2017) NKX2-3_eDBD_Methyl-HT-SELEX_2	0.801	0.860
NKX2-3 M05046_2.00	Homo sapiens	BNBAAGTGBN	NVCACTTVNV	SELEX Yin et al.(2017) NKX2-3_FL_Methyl-HT-SELEX_1	0.801	0.860
NKX2-3 M05047_2.00	Homo sapiens	SWYAACSHB	VDSGTTRWS	SELEX Yin et al.(2017) NKX2-3_FL_Methyl-HT-SELEX_2	0.801	0.860
ceh-28 M08210_2.00	Caenorhabditis elegans	AATCGATW	WATCGATT	ChIP-seq Contrino et al.(2012) Mw138	0.797	0.702
Nkx2-2 M00438_2.00	Mus musculus	NNNRAGDRN	NYHCTYNNN	PBM Berger et al.(2008) Nkx2-2_2823	0.782	0.877
Nkx2-2 M09190_2.00	Mus musculus	NTBRAGWGBBN	NVVCWCTYVAN	Misc Kulakovskiy et al.(2013) NKX22_MOUSE.H11MO.0.A	0.782	0.877
NKX2-2 M10681_2.00	Homo sapiens	WTAAGTRBTT	AAVYACTTAW	Transfac Matys et al.(2006) V$NKX22_01	0.782	0.877
NKX2-2 M10682_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX2B_Q3_01	0.782	0.877
NKX2-2 M10683_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$NKX2B_Q3	0.782	0.877
vnd M06551_2.00	Drosophila melanogaster	WYTCAAGTR	YACTTGARW	B1H Mathelier et al.(2014) MA0253.1	0.782	0.860
vnd M06377_2.00	Drosophila melanogaster	WYTCAAGTR	YACTTGARW	B1H Zhu et al.(2011) Vnd_Cell_FBgn0003986	0.782	0.860
vnd M06378_2.00	Drosophila melanogaster	KYTSAAGWGY	RCWCTTSARM	B1H Zhu et al.(2011) vnd_FlyReg_FBgn0003986	0.782	0.860
vnd M06379_2.00	Drosophila melanogaster	BTBAAGTR	YACTTVAV	B1H Zhu et al.(2011) Vnd_SOLEXA_FBgn0003986	0.782	0.860
vnd M09683_2.00	Drosophila melanogaster	TCAAGTGB	VCACTTGA	Misc Kulakovskiy et al.(2009) vnd	0.782	0.860
Nkx2-9 M00520_2.00	Mus musculus	NNNRAGDRBN	NVYHCTYNNN	PBM Berger et al.(2008) Nkx2-9_3082	0.775	0.807
Nkx2-9 M00800_2.00	Mus musculus	NNRAGDRBNN	NNVYHCTYNN	PBM Weirauch et al.(2013) pTH2842	0.775	0.807
Nkx2-9 M09215_2.00	Mus musculus	BTCAAGKRB	VYMCTTGAV	Misc Kulakovskiy et al.(2013) NKX28_MOUSE.H11MO.0.C	0.775	0.807
tin M00559_2.00	Drosophila melanogaster	NWYAAGTGGNN	NNCCACTTRWN	PBM Busser et al.(2012a) Tin	0.772	0.684
tin M03809_2.00	Drosophila melanogaster	BTYAAGTGSN	NSCACTTRAV	SELEX Nitta et al.(2015) tin_1	0.772	0.684
tin M06284_2.00	Drosophila melanogaster	BTYAAGTG	CACTTRAV	B1H Zhu et al.(2011) Tin_Cell_FBgn0004110	0.772	0.684
tin M06285_2.00	Drosophila melanogaster	BCTCAAGTGSVN	NBSCACTTGAGV	B1H Zhu et al.(2011) tin_FlyReg_FBgn0004110	0.772	0.684
tin M06286_2.00	Drosophila melanogaster	BWYAAGTR	YACTTRWV	B1H Zhu et al.(2011) Tin_SOLEXA_FBgn0004110	0.772	0.684
tin M08421_2.00	Drosophila melanogaster	DBTCRAGTGS	SCACTYGAVH	ChIP-chip Mathelier et al.(2014) MA0247.2	0.772	0.684
NKX2-5 M00320_2.00	Homo sapiens	NHBAAKWRN	NYWMTTVDN	PBM Barrera et al.(2016) NKX2-5_K183E	0.770	0.825
Nkx2-6 M00496_2.00	Mus musculus	HYAAGTRBNN	NNVYACTTRD	PBM Berger et al.(2008) Nkx2-6_3437	0.763	0.789
ceh-22 M00376_2.00	Caenorhabditis elegans	WBRAGTRBNN	NNVYACTYVW	PBM Berger et al.(2006) Ceh-22	0.761	0.807
NKX2-8 M00302_2.00	Homo sapiens	NNRAGDRB	VYHCTYNN	PBM Barrera et al.(2016) NKX2-8_REF	0.743	0.807
NKX2-8 M05149_2.00	Homo sapiens	BTSRAGTGBN	NVCACTYSAV	SELEX Yin et al.(2017) NKX2-8_FL_HT-SELEX	0.743	0.807
NKX2-8 M09145_2.00	Homo sapiens	BTCAAGKRB	VYMCTTGAV	Misc Kulakovskiy et al.(2013) NKX28_HUMAN.H11MO.0.C	0.743	0.807
NKX2-8 M05150_2.00	Homo sapiens	GCARTAACGACATC	GATGTCGTTAYTGC	SELEX Yin et al.(2017) NKX2-8_FL_Methyl-HT-SELEX_1	0.743	0.807
NKX2-8 M05151_2.00	Homo sapiens	BTSAAGTGBN	NVCACTTSAV	SELEX Yin et al.(2017) NKX2-8_FL_Methyl-HT-SELEX_2	0.743	0.807
NKX2-8 M05152_2.00	Homo sapiens	BTBAACGAB	VTCGTTVAV	SELEX Yin et al.(2017) NKX2-8_FL_Methyl-HT-SELEX_3	0.743	0.807
NKX2-8 M00301_2.00	Homo sapiens	NNRAKDRB	VYHMTYNN	PBM Barrera et al.(2016) NKX2-8_A94T	0.743	0.789
Q24782_9CNID M02206_2.00	Eleutheria dichotoma	TTAATTAA	TTAATTAA	PBM Weirauch et al.(2014) pTH5486	0.600	0.474
For this family, TFs with SR scores > 0.599* will likely have a similar motif*