Cob_10045 (Colletotrichum orbiculare)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Cob_10045 T206028_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tgif2
M00521_2.00 		Mus musculus
NNTGACANNN
NNNTGTCANN		 PBM
Berger et al.(2008)
Tgif2_3451 		0.721 0.600
TGIF2
M03123_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
TGIF2_1 		0.721 0.600
TGIF2
M05032_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2_eDBD_HT-SELEX 		0.721 0.600
TGIF2
M05034_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Yin et al.(2017)
TGIF2_FL_HT-SELEX 		0.721 0.600
TGIF2
M05033_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
TGIF2_eDBD_Methyl-HT-SELEX 		0.721 0.600
TGIF2
M05035_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Yin et al.(2017)
TGIF2_FL_Methyl-HT-SELEX 		0.721 0.600
hth
M06490_2.00 		Drosophila melanogaster
TGACAK
MTGTCA		 B1H
Mathelier et al.(2014)
MA0227.1 		0.716 0.582
hth
M06252_2.00 		Drosophila melanogaster
TGTCA
TGACA		 B1H
Zhu et al.(2011)
Hth_Cell_FBgn0001235 		0.716 0.582
hth
M06253_2.00 		Drosophila melanogaster
NNTGACAD
HTGTCANN		 B1H
Zhu et al.(2011)
hth_SOLEXA_2_FBgn0001235 		0.716 0.582
hth
M06254_2.00 		Drosophila melanogaster
NTGACA
TGTCAN		 B1H
Zhu et al.(2011)
Hth_SOLEXA_FBgn0001235 		0.716 0.582
Meis1
M00407_2.00 		Mus musculus
NTGACADNN
NNHTGTCAN		 PBM
Berger et al.(2008)
Meis1_2335 		0.716 0.545
Meis2
M00437_2.00 		Mus musculus
NTGACANNN
NNNTGTCAN		 PBM
Berger et al.(2008)
Mrg1_2246 		0.716 0.545
Meis3
M00488_2.00 		Mus musculus
NTGACANNN
NNNTGTCAN		 PBM
Berger et al.(2008)
Mrg2_2302 		0.716 0.545
MEIS1
M03165_2.00 		Homo sapiens
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
MEIS1_1 		0.716 0.545
MEIS2
M03147_2.00 		Homo sapiens
WTGACAGSTGTCAM
KTGACASCTGTCAW		 SELEX
Jolma et al.(2013)
MEIS2_1 		0.716 0.545
MEIS2
M03148_2.00 		Homo sapiens
DTGACAGS
SCTGTCAH		 SELEX
Jolma et al.(2013)
MEIS2_2 		0.716 0.545
Meis2
M03261_2.00 		Mus musculus
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
Meis2_1 		0.716 0.545
Meis2
M03262_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Meis2_2 		0.716 0.545
Meis3
M03279_2.00 		Mus musculus
NTGACAN
NTGTCAN		 SELEX
Jolma et al.(2013)
Meis3_1 		0.716 0.545
Meis3
M03280_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Meis3_2 		0.716 0.545
MEIS2
M02740_2.00 		Homo sapiens
TGACASSTGTC
GACASSTGTCA		 SELEX
Jolma et al.(2010)
MEIS2_dimer 		0.716 0.545
MEIS2
M02741_2.00 		Homo sapiens
GGACAKNT
ANMTGTCC		 SELEX
Jolma et al.(2010)
MEIS2_monomer 		0.716 0.545
MEIS2
M05138_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_eDBD_HT-SELEX 		0.716 0.545
MEIS2
M05140_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_FL_HT-SELEX 		0.716 0.545
MEIS1
M09148_2.00 		Homo sapiens
NTGATTDATDDB
VHHATHAATCAN		 Misc
Kulakovskiy et al.(2013)
MEIS1_HUMAN.H11MO.0.A 		0.716 0.545
MEIS2
M09143_2.00 		Homo sapiens
HTGACAGBTKTBM
KVAMAVCTGTCAD		 Misc
Kulakovskiy et al.(2013)
MEIS2_HUMAN.H11MO.0.B 		0.716 0.545
Meis1
M09178_2.00 		Mus musculus
NTGATTDATDDB
VHHATHAATCAN		 Misc
Kulakovskiy et al.(2013)
MEIS1_MOUSE.H11MO.0.A 		0.716 0.545
Meis2
M09189_2.00 		Mus musculus
HTGACAGBTKTBM
KVAMAVCTGTCAD		 Misc
Kulakovskiy et al.(2013)
MEIS2_MOUSE.H11MO.0.B 		0.716 0.545
Meis1
M09568_2.00 		Mus musculus
VBTGWCASNN
NNSTGWCAVB		 Misc
Heinz et al.(2010)
MastCells-Meis1_GSE48085 		0.716 0.545
MEIS1
M10709_2.00 		Homo sapiens
NHNTGACAGNDN
NHNCTGTCANDN		 Transfac
Matys et al.(2006)
V$MEIS1_01 		0.716 0.545
MEIS1
M10710_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MEIS1_06 		0.716 0.545
MEIS2
M05139_2.00 		Homo sapiens
YGACASSYGHCR
YGDCRSSTGTCR		 SELEX
Yin et al.(2017)
MEIS2_eDBD_Methyl-HT-SELEX 		0.716 0.545
MEIS2
M05141_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
MEIS2_FL_Methyl-HT-SELEX 		0.716 0.545
achi
M03860_2.00 		Drosophila melanogaster
TGACAD
HTGTCA		 SELEX
Nitta et al.(2015)
achi_1 		0.694 0.491
achi
M03861_2.00 		Drosophila melanogaster
TGACAGMTGTCA
TGACAKCTGTCA		 SELEX
Nitta et al.(2015)
achi_2 		0.694 0.491
achi
M03862_2.00 		Drosophila melanogaster
TGACAGNNNNNNYGTCA
TGACRNNNNNNCTGTCA		 SELEX
Nitta et al.(2015)
achi_3 		0.694 0.491
vis
M03859_2.00 		Drosophila melanogaster
TGACAS
STGTCA		 SELEX
Nitta et al.(2015)
vis_1 		0.694 0.491
vis
M06534_2.00 		Drosophila melanogaster
TGACAB
BTGTCA		 B1H
Mathelier et al.(2014)
MA0252.1 		0.694 0.491
achi
M06535_2.00 		Drosophila melanogaster
TGACAG
CTGTCA		 B1H
Mathelier et al.(2014)
MA0207.1 		0.694 0.491
achi
M06345_2.00 		Drosophila melanogaster
TGTCADW
WHTGACA		 B1H
Zhu et al.(2011)
Achi_Cell_FBgn0033749 		0.694 0.491
achi
M06346_2.00 		Drosophila melanogaster
HTGACA
TGTCAD		 B1H
Zhu et al.(2011)
Achi_SOLEXA_FBgn0033749 		0.694 0.491
vis
M06343_2.00 		Drosophila melanogaster
TGTCA
TGACA		 B1H
Zhu et al.(2011)
Vis_Cell_FBgn0033748 		0.694 0.491
vis
M06344_2.00 		Drosophila melanogaster
TGTCAD
HTGACA		 B1H
Zhu et al.(2011)
Vis_SOLEXA_FBgn0033748 		0.694 0.491
Pknox1
M00399_2.00 		Mus musculus
HGACRNNN
NNNYGTCD		 PBM
Berger et al.(2008)
Pknox1_2364 		0.689 0.564
Pknox2
M00468_2.00 		Mus musculus
NNNGACRNNN
NNNYGTCNNN		 PBM
Berger et al.(2008)
Pknox2_3077 		0.689 0.564
PKNOX1
M03178_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
PKNOX1_1 		0.689 0.564
PKNOX2
M03195_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
PKNOX2_1 		0.689 0.564
Pknox2
M03270_2.00 		Mus musculus
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
Pknox2_1 		0.689 0.564
PKNOX1
M05206_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_eDBD_HT-SELEX 		0.689 0.564
PKNOX1
M05208_2.00 		Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_FL_HT-SELEX 		0.689 0.564
PKNOX2
M05246_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
PKNOX2_eDBD_HT-SELEX 		0.689 0.564
PKNOX1
M09150_2.00 		Homo sapiens
TGABTGRCRGV
BCYGYCAVTCA		 Misc
Kulakovskiy et al.(2013)
PKNX1_HUMAN.H11MO.0.B 		0.689 0.564
Pknox1
M09175_2.00 		Mus musculus
TGABTGRCRGV
BCYGYCAVTCA		 Misc
Kulakovskiy et al.(2013)
PKNX1_MOUSE.H11MO.0.A 		0.689 0.564
PKNOX1
M10712_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PREP1_Q3 		0.689 0.564
PKNOX1
M05207_2.00 		Homo sapiens
YGWCASSTGWCR
YGWCASSTGWCR		 SELEX
Yin et al.(2017)
PKNOX1_eDBD_Methyl-HT-SELEX 		0.689 0.564
PKNOX1
M05209_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
PKNOX1_FL_Methyl-HT-SELEX 		0.689 0.564
PKNOX2
M05247_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
PKNOX2_eDBD_Methyl-HT-SELEX 		0.689 0.564
Tgif1
M00500_2.00 		Mus musculus
NNTGACANNN
NNNTGTCANN		 PBM
Berger et al.(2008)
Tgif1_2342 		0.689 0.564
TGIF1
M03223_2.00 		Homo sapiens
TGACAGCTGTCA
TGACAGCTGTCA		 SELEX
Jolma et al.(2013)
TGIF1_1 		0.689 0.564
TGIF1
M05317_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Yin et al.(2017)
TGIF1_eDBD_HT-SELEX 		0.689 0.564
TGIF1
M09159_2.00 		Homo sapiens
TGACAGS
SCTGTCA		 Misc
Kulakovskiy et al.(2013)
TGIF1_HUMAN.H11MO.0.A 		0.689 0.564
Tgif1
M09211_2.00 		Mus musculus
TGACAGBNV
BNVCTGTCA		 Misc
Kulakovskiy et al.(2013)
TGIF1_MOUSE.H11MO.0.A 		0.689 0.564
TGIF1
M10740_2.00 		Homo sapiens
WHNTGACARST
ASYTGTCANDW		 Transfac
Matys et al.(2006)
V$TGIF_01 		0.689 0.564
TGIF1
M05318_2.00 		Homo sapiens
TGACAKVTGTCA
TGACABMTGTCA		 SELEX
Yin et al.(2017)
TGIF1_eDBD_Methyl-HT-SELEX 		0.689 0.564
unc-62
M02185_2.00 		Caenorhabditis elegans
NHDAHANNN
NNNTDTHDN		 PBM
Weirauch et al.(2014)
pTH5781 		0.680 0.509
TGIF2LX
M03171_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
TGIF2LX_1 		0.623 0.564
TGIF2LX
M05191_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_eDBD_HT-SELEX 		0.623 0.564
TGIF2LX
M05193_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_FL_HT-SELEX 		0.623 0.564
TGIF2LX
M05192_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_eDBD_Methyl-HT-SELEX 		0.623 0.564
TGIF2LX
M05194_2.00 		Homo sapiens
TGACASSTGTCA
TGACASSTGTCA		 SELEX
Yin et al.(2017)
TGIF2LX_FL_Methyl-HT-SELEX 		0.623 0.564
TGIF2LY
M05313_2.00 		Homo sapiens
TGACABVTGTCA
TGACABVTGTCA		 SELEX
Yin et al.(2017)
TGIF2LY_eDBD_HT-SELEX 		0.623 0.545
TGIF2LY
M05314_2.00 		Homo sapiens
YGACABVTGTCR
YGACABVTGTCR		 SELEX
Yin et al.(2017)
TGIF2LY_eDBD_Methyl-HT-SELEX 		0.623 0.545
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENH81014 Homeodomain 283 340

Links

Other Homeodomain family TFs
Other Colletotrichum orbiculare TFs

817 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I
BZO2H3 Arabidopsis lyrata fgenesh2_kg.6__2797__AT5G28770.2 I
Bo7g093030 Brassica oleracea Bo7g093030 I
Bra010010 Brassica rapa Bra010010 I
PK07533.1 Cannabis sativa PK07533.1 I
PK05128.1 Cannabis sativa PK05128.1 D
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I
Ca_03753 Cicer arietinum Ca_03753 I
Cla020112 Citrullus lanatus Cla020112 I
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I
Cucsa.133290 Cucumis sativus Cucsa.133290 I
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I
GLYMA03G40730 Glycine max GLYMA03G40730 I
GLYMA19G43420 Glycine max GLYMA19G43420 I
GLYMA11G12240 Glycine max GLYMA11G12240 I
GLYMA12G04440 Glycine max GLYMA12G04440 I
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I
MLOC_52125 Hordeum vulgare MLOC_52125 N
Lus10015913.g Linum usitatissimum Lus10015913.g I
Lus10006590.g Linum usitatissimum Lus10006590.g I
MDP0000270365 Malus domestica MDP0000270365 I
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I
mgf003466m Mimulus guttatus mgf003466m I
mgf009803m Mimulus guttatus mgf009803m I
mgf018581m Mimulus guttatus mgf018581m I
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I
GSMUA_Achr2G06540_001 Musa acuminata GSMUA_Achr2G06540_001 I
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I
OB05G12090 Oryza brachyantha OB05G12090 N
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I
gw1.83.117.1 Physcomitrella patens gw1.83.117.1 I
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I
30131.m007078 Ricinus communis 30131.m007078 I
29598.m000468 Ricinus communis 29598.m000468 I
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I
SELMODRAFT_17886 Selaginella moellendorffii SELMODRAFT_17886 I
Si022331m.g Setaria italica Si022331m.g I
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I
Sb08g020600 Sorghum bicolor Sb08g020600 I
TCM_026349 Theobroma cacao TCM_026349 I
Traes_1AS_94B6230FB1 Triticum aestivum Traes_1AS_94B6230FB1 N
Traes_1BS_A44C97E0F Triticum aestivum Traes_1BS_A44C97E0F N
Traes_1DS_62FDD3493 Triticum aestivum Traes_1DS_62FDD3493 N
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I
VIT_05s0077g01140 Vitis vinifera VIT_05s0077g01140 I
BZO2H3 Vitis vinifera VIT_14s0030g02200 I