IRX4 (Bos taurus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSBTAG00000015907 T207489_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Irx4
M00416_2.00 		Mus musculus
NNNDAMAH
DTKTHNNN		 PBM
Berger et al.(2008)
Irx4_2242 		0.867 1.000
Irx6
M00456_2.00 		Mus musculus
NNDAHWN
NWDTHNN		 PBM
Berger et al.(2008)
Irx6_2623 		0.790 0.929
ara
M06518_2.00 		Drosophila melanogaster
WWACA
TGTWW		 B1H
Mathelier et al.(2014)
MA0210.1 		0.788 0.929
ara
M06313_2.00 		Drosophila melanogaster
TGTWWWNN
NNWWWACA		 B1H
Zhu et al.(2011)
Ara_Cell_FBgn0015904 		0.788 0.929
ara
M06314_2.00 		Drosophila melanogaster
DWWACA
TGTWWH		 B1H
Zhu et al.(2011)
Ara_SOLEXA_FBgn0015904 		0.788 0.929
caup
M06519_2.00 		Drosophila melanogaster
WAACA
TGTTW		 B1H
Mathelier et al.(2014)
MA0217.1 		0.780 0.893
caup
M06315_2.00 		Drosophila melanogaster
HWDWAACA
TGTTWHWD		 B1H
Zhu et al.(2011)
Caup_Cell_FBgn0015919 		0.780 0.893
caup
M06316_2.00 		Drosophila melanogaster
NDDACA
TGTHHN		 B1H
Zhu et al.(2011)
Caup_SOLEXA_FBgn0015919 		0.780 0.893
Irx2
M00386_2.00 		Mus musculus
NNDACAHNN
NNDTGTHNN		 PBM
Berger et al.(2008)
Irx2_0900 		0.780 0.893
Irx5
M00455_2.00 		Mus musculus
NNNDACAHN
NDTGTHNNN		 PBM
Berger et al.(2008)
Irx5_2385 		0.780 0.893
IRX2
M03212_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX2_1 		0.780 0.893
IRX5
M03222_2.00 		Homo sapiens
NDACAYRACAHN
NDTGTYRTGTHN		 SELEX
Jolma et al.(2013)
IRX5_1 		0.780 0.893
IRX5
M05315_2.00 		Homo sapiens
NBDTGTHNDACAYVN
NBRTGTHNDACAHVN		 SELEX
Yin et al.(2017)
IRX5_eDBD_HT-SELEX 		0.780 0.893
IRX5
M05316_2.00 		Homo sapiens
WYRYGHHNHAYRYRY
RYRYRTDNDDCRYRW		 SELEX
Yin et al.(2017)
IRX5_eDBD_Methyl-HT-SELEX 		0.780 0.893
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000021145 Homeodomain 144 202

Links

Other Homeodomain family TFs
Other Bos taurus TFs

389 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_22440 Aegilops tauschii F775_22440 N 0.000
F775_22671 Aegilops tauschii F775_22671 N 0.000
BRADI1G29857 Brachypodium distachyon BRADI1G29857 N 0.000
BRADI1G76207 Brachypodium distachyon BRADI1G76207 N 0.000
MLOC_65456 Hordeum vulgare MLOC_65456 N 0.000
MLOC_15184 Hordeum vulgare MLOC_15184 N 0.000
LPERR06G23420 Leersia perrieri LPERR06G23420 N 0.000
LPERR03G02450 Leersia perrieri LPERR03G02450 N 0.000
GSMUA_Achr7G04030_001 Musa acuminata GSMUA_Achr7G04030_001 N 0.000
GSMUA_Achr3G14720_001 Musa acuminata GSMUA_Achr3G14720_001 N 0.000
GSMUA_Achr3G00560_001 Musa acuminata GSMUA_Achr3G00560_001 N 0.000
OBART03G02620 Oryza barthii OBART03G02620 N 0.000
OBART03G02630 Oryza barthii OBART03G02630 N 0.000
OBART06G27980 Oryza barthii OBART06G27980 N 0.000
OB03G12640 Oryza brachyantha OB03G12640 N 0.000
ORGLA03G0024300 Oryza glaberrima ORGLA03G0024300 N 0.000
ORGLA06G0236900 Oryza glaberrima ORGLA06G0236900 N 0.000
OGLUM03G02560 Oryza glumaepatula OGLUM03G02560 N 0.000
OGLUM06G29360 Oryza glumaepatula OGLUM06G29360 N 0.000
BGIOSGA011514 Oryza indica BGIOSGA011514 N 0.000
OLONG_016677 Oryza longistaminata OLONG_016677 N 0.000
OMERI06G27920 Oryza meridionalis OMERI06G27920 N 0.000
OMERI03G02480 Oryza meridionalis OMERI03G02480 N 0.000
ONIVA03G02250 Oryza nivara ONIVA03G02250 N 0.000
ONIVA06G30950 Oryza nivara ONIVA06G30950 N 0.000
OPUNC03G02420 Oryza punctata OPUNC03G02420 N 0.000
OPUNC06G25510 Oryza punctata OPUNC06G25510 N 0.000
ORUFI03G02380 Oryza rufipogon ORUFI03G02380 N 0.000
ORUFI06G29930 Oryza rufipogon ORUFI06G29930 N 0.000
OS03G0133000 Oryza sativa OS03G0133000 N 0.000
OS06G0726300 Oryza sativa OS06G0726300 N 0.000
Pavir.J24394 Panicum virgatum Pavir.J24394 N 0.000
Pavir.J01198 Panicum virgatum Pavir.J01198 N 0.000
Pavir.Ia04458 Panicum virgatum Pavir.Ia04458 N 0.000
Pavir.Db00028 Panicum virgatum Pavir.Db00028 N 0.000
Si036757m.g Setaria italica Si036757m.g N 0.000
Si006994m.g Setaria italica Si006994m.g N 0.000
Sb01g048130 Sorghum bicolor Sb01g048130 N 0.000
Sb10g030770 Sorghum bicolor Sb10g030770 N 0.000
Traes_4DL_7CB8EC5A8 Triticum aestivum Traes_4DL_7CB8EC5A8 N 0.000
Traes_4DL_B29067862 Triticum aestivum Traes_4DL_B29067862 N 0.000
TRIUR3_18560 Triticum urartu TRIUR3_18560 N 0.000
TRIUR3_32216 Triticum urartu TRIUR3_32216 N 0.000
TRIUR3_33949 Triticum urartu TRIUR3_33949 N 0.000
GRMZM2G389557 Zea mays GRMZM2G389557 N 0.000
GRMZM2G059428 Zea mays GRMZM2G059428 N 0.000
GRMZM2G074358 Zea mays GRMZM2G074358 N 0.000
GRMZM2G126817 Zea mays GRMZM2G126817 N 0.000