CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

HOXC13 *(Canis familiaris)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSCAFG00000006648	T207594_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hoxc13 M00389_2.00	Mus musculus	NTTWAYDRNN	NNYHRTWAAN	PBM Berger et al.(2008) Hoxc13_3127	0.867	1.000
HOXC13 M03129_2.00	Homo sapiens	NTTTTATTRS	SYAATAAAAN	SELEX Jolma et al.(2013) HOXC13_1	0.867	1.000
HOXC13 M03130_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXC13_2	0.867	1.000
HOXC13 M05072_2.00	Homo sapiens	RKTTTATKGSN	NSCMATAAAMY	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_1	0.867	1.000
HOXC13 M05073_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_2	0.867	1.000
HOXC13 M10680_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC13_Q2	0.867	1.000
HOXC13 M05074_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_Methyl-HT-SELEX	0.867	1.000
Hoxa13 M00473_2.00	Mus musculus	NTTWAYDRN	NYHRTWAAN	PBM Berger et al.(2008) Hoxa13_3126	0.862	0.930
HOXA13 M03098_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_1	0.862	0.930
HOXA13 M03099_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_2	0.862	0.930
HOXA13 M03100_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_3	0.862	0.930
HOXA13 M03101_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_4	0.862	0.930
HOXA13 M04977_2.00	Homo sapiens	DTTTTATKGGB	VCCMATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_1	0.862	0.930
HOXA13 M04978_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_2	0.862	0.930
HOXA13 M04981_2.00	Homo sapiens	DTTTTATKRSN	NSYMATAAAAH	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_1	0.862	0.930
HOXA13 M04982_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_2	0.862	0.930
HOXA13 M09134_2.00	Homo sapiens	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_HUMAN.H11MO.0.C	0.862	0.930
Hoxa13 M09202_2.00	Mus musculus	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_MOUSE.H11MO.0.C	0.862	0.930
HOXA13 M10653_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_01	0.862	0.930
HOXA13 M10654_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_02	0.862	0.930
HOXA13 M04979_2.00	Homo sapiens	DTTTTATTRSN	NSYAATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_1	0.862	0.930
HOXA13 M04980_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_2	0.862	0.930
HOXA13 M04983_2.00	Homo sapiens	DKTTTATTGBN	NVCAATAAAMH	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_1	0.862	0.930
HOXA13 M04984_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_2	0.862	0.930
HOXD13 M00299_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_REF	0.834	0.860
Hoxd13 M00394_2.00	Mus musculus	NWTHRYDDN	NHHRYDAWN	PBM Berger et al.(2008) Hoxd13_2356	0.834	0.860
HOXD13 M03141_2.00	Homo sapiens	DTTTTATKRS	SYMATAAAAH	SELEX Jolma et al.(2013) HOXD13_1	0.834	0.860
HOXD13 M03142_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXD13_2	0.834	0.860
Hoxd13 M03247_2.00	Mus musculus	DKTTTATTRS	SYAATAAAMH	SELEX Jolma et al.(2013) Hoxd13_1	0.834	0.860
Hoxd13 M03248_2.00	Mus musculus	DDTTTAYKAGN	NCTMRTAAAHH	SELEX Jolma et al.(2013) Hoxd13_2	0.834	0.860
HOXD13 M05122_2.00	Homo sapiens	GKTTTATKGSS	SSCMATAAAMC	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_1	0.834	0.860
HOXD13 M05123_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_2	0.834	0.860
HOXD13 M10689_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD13_Q6	0.834	0.860
HOXD13 M00295_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_N298S	0.834	0.860
HOXD13 M05124_2.00	Homo sapiens	DDTTTATTRBB	VVYAATAAAHH	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_1	0.834	0.860
HOXD13 M05125_2.00	Homo sapiens	VCTCGTAAAAH	DTTTTACGAGB	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_2	0.834	0.860
HOXD13 M00300_2.00	Homo sapiens	WTTTATDR	YHATAAAW	PBM Barrera et al.(2016) HOXD13_S316C	0.834	0.842
HOXD13 M00293_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Barrera et al.(2016) HOXD13_I297V	0.834	0.842
hoxd13a M02081_2.00	Danio rerio	WTTTATDR	YHATAAAW	PBM Weirauch et al.(2014) pTH6143	0.832	0.825
HOXD13 M00298_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_R306W	0.826	0.842
HOXD13 M00294_2.00	Homo sapiens	THGTWAAW	WTTWACDA	PBM Barrera et al.(2016) HOXD13_I322L	0.816	0.842
HOXB13 M02092_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Weirauch et al.(2014) pTH5808	0.713	0.807
Hoxb13 M00505_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb13_3479	0.713	0.807
HOXB13 M03175_2.00	Homo sapiens	DTTTTATKGG	CCMATAAAAH	SELEX Jolma et al.(2013) HOXB13_1	0.713	0.807
HOXB13 M03176_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXB13_2	0.713	0.807
HOXB13 M05201_2.00	Homo sapiens	DTTTTATKGGN	NCCMATAAAAH	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_1	0.713	0.807
HOXB13 M05202_2.00	Homo sapiens	NCTCGTAAAHH	DDTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_2	0.713	0.807
HOXB13 M09149_2.00	Homo sapiens	TTTTATDRSN	NSYHATAAAA	Misc Kulakovskiy et al.(2013) HXB13_HUMAN.H11MO.0.A	0.713	0.807
HOXB13 M05203_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_Methyl-HT-SELEX	0.713	0.807
cad M03780_2.00	Drosophila melanogaster	NKTTTATKRCHB	VDGYMATAAAMN	SELEX Nitta et al.(2015) cad_1	0.606	0.561
cad M03781_2.00	Drosophila melanogaster	NDTTTATKRCHN	NDGYMATAAAHN	SELEX Nitta et al.(2015) cad_2	0.606	0.561
cad M03782_2.00	Drosophila melanogaster	NDTTTATKRCNB	VNGYMATAAAHN	SELEX Nitta et al.(2015) cad_3	0.606	0.561
cad M03783_2.00	Drosophila melanogaster	NNTTTAYGRYNN	NNRYCRTAAANN	SELEX Nitta et al.(2015) cad_4	0.606	0.561
cad M06223_2.00	Drosophila melanogaster	HTTWATTR	YAATWAAD	B1H Zhu et al.(2011) Cad_Cell_FBgn0000251	0.606	0.561
cad M06224_2.00	Drosophila melanogaster	RBYVDAAMV	BKTTHBRVY	B1H Zhu et al.(2011) cad_FlyReg_FBgn0000251	0.606	0.561
cad M06225_2.00	Drosophila melanogaster	NTTWATKR	YMATWAAN	B1H Zhu et al.(2011) Cad_SOLEXA_FBgn0000251	0.606	0.561
cad M08420_2.00	Drosophila melanogaster	DTTTTATKRYY	RRYMATAAAAH	ChIP-chip Mathelier et al.(2014) MA0216.2	0.606	0.561
cad M09580_2.00	Drosophila melanogaster	DTTTAYGRYN	NRYCRTAAAH	Misc Heinz et al.(2010) Drosophila-Embryos_modEncode	0.606	0.561
cad M09674_2.00	Drosophila melanogaster	HTTTATKRBY	RVYMATAAAD	Misc Kulakovskiy et al.(2009) cad	0.606	0.561
cad M10783_2.00	Drosophila melanogaster	Transfac license required	Transfac license required	Transfac Matys et al.(2006) I$CAD_Q6	0.606	0.561
HOXD13 M00296_2.00	Homo sapiens	GKATAAAH	DTTTATMC	PBM Barrera et al.(2016) HOXD13_Q325K	0.601	0.842
HOXD13 M00297_2.00	Homo sapiens	NWTWRKNNNN	NNNNMYWAWN	PBM Barrera et al.(2016) HOXD13_Q325R	0.601	0.842
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSCAFP00000009935	Homeodomain	255	311	RKKRVPYTKVQLKELEKEYAASKFITKEKRRRISATTNLSERQVTIWFQNRRVKEKK

Links
Other Homeodomain family TFs
Other *Canis familiaris* TFs

275 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000018841	Ailuropoda melanoleuca	ENSAMEG00000018841	I	0.000
Alligator_sinensis_CCG006462.1	Alligator sinensis	Alligator_sinensis_CCG006462.1	I	0.000
ENSAPLG00000000568	Anas platyrhynchos	ENSAPLG00000000568	I	0.000
CEBPG	Anolis carolinensis	ENSACAG00000013617	I	0.000
AATE011183	Anopheles atroparvus	AATE011183	I	0.000
ASIS008585	Anopheles sinensis	ASIS008585	I	0.000
Afo_R014000	Aptenodytes forsteri	Afo_R014000	I	0.000
ENSAMXG00000026123	Astyanax mexicanus	ENSAMXG00000026123	I	0.000
ENSBTAP00000023345-D1	Bos grunniens	ENSBTAP00000023345-D1	I	0.000
CEBPG	Bos taurus	ENSBTAG00000017560	I	0.000
estExt_fgenesh2_pg.C_760066	Branchiostoma floridae	estExt_fgenesh2_pg.C_760066	I	0.000
estExt_fgenesh2_pg.C_570127	Branchiostoma floridae	estExt_fgenesh2_pg.C_570127	I	0.000
Brh_R009933	Buceros rhinoceros	Brh_R009933	I	0.000
CEBPG	Callithrix jacchus	ENSCJAG00000035363	I	0.000
Aan_R003393	Calypte anna	Aan_R003393	I	0.000
CEBPG	Canis familiaris	ENSCAFG00000007405	I	0.000
ENSCPOG00000014835	Cavia porcellus	ENSCPOG00000014835	I	0.000
Cmyd_10014706	Chelonia mydas	Cmyd_10014706	I	0.000
ENSCSAG00000018517	Chlorocebus sabaeus	ENSCSAG00000018517	I	0.000
KGM_20079	Danaus plexippus	KGM_20079	I	0.000
cebpg	Danio rerio	ENSDARG00000036073	I	0.000
CEBPG	Dasypus novemcinctus	ENSDNOG00000003950	I	0.000
YQE_08773	Dendroctonus ponderosae	YQE_08773	I	0.000
CEBPG	Echinops telfairi	ENSETEG00000017071	I	0.000
CEBPG	Equus caballus	ENSECAG00000004879	I	0.000
CEBPG	Erinaceus europaeus	ENSEEUG00000012797	I	0.000
CEBPG	Felis catus	ENSFCAG00000028096	I	0.000
ENSFALG00000014352	Ficedula albicollis	ENSFALG00000014352	I	0.000
ENSGALG00000004867	Gallus gallus	ENSGALG00000004867	I	0.000
cebpg	Gasterosteus aculeatus	ENSGACG00000017539	I	0.000
Gfo_R009960	Geospiza fortis	Gfo_R009960	I	0.000
CEBPG	Gorilla gorilla	ENSGGOG00000012138	I	0.000
HMEL013192	Heliconius melpomene	HMEL013192	I	0.000
CEBPG	Homo sapiens	ENSG00000153879	D	0.000
ENSSTOG00000007596	Ictidomys tridecemlineatus	ENSSTOG00000007596	I	0.000
ENSLACG00000005088	Latimeria chalumnae	ENSLACG00000005088	I	0.000
ENSLOCG00000017587	Lepisosteus oculatus	ENSLOCG00000017587	I	0.000
LDEC004833	Leptinotarsa decemlineata	LDEC004833	I	0.000
CEBPG	Loxodonta africana	ENSLAFG00000017998	I	0.000
ENSP00000284000	Macaca fascicularis	ENSP00000284000	I	0.000
CEBPG	Macaca mulatta	ENSMMUG00000006127	I	0.000
CEBPG	Meleagris gallopavo	ENSMGAG00000015603	I	0.000
ENSMICG00000013426	Microcebus murinus	ENSMICG00000013426	I	0.000
CEBPG	Monodelphis domestica	ENSMODG00000023494	I	0.000
ENSMPUG00000018937	Mustela putorius furo	ENSMPUG00000018937	I	0.000
Cebpg	Mus musculus	ENSMUSG00000056216	D	0.000
Myotis_brandtii_CEBPG_10035215	Myotis brandtii	Myotis_brandtii_CEBPG_10035215	I	0.000
CEBPG	Myotis lucifugus	ENSMLUG00000005181	I	0.000
CEBPG	Ochotona princeps	ENSOPRG00000012139	I	0.000
Ogr04139	Ophisaurus gracilis	Ogr04139	I	0.000
ENSONIG00000020606	Oreochromis niloticus	ENSONIG00000020606	I	0.000
CEBPG	Ornithorhynchus anatinus	ENSOANG00000008143	I	0.000
CEBPG	Oryctolagus cuniculus	ENSOCUG00000017036	I	0.000
cebpg	Oryzias latipes	ENSORLG00000018652	I	0.000
CEBPG	Otolemur garnettii	ENSOGAG00000010436	I	0.000
ENSOARG00000011183	Ovis aries	ENSOARG00000011183	I	0.000
CEBPG	Pan troglodytes	ENSPTRG00000010808	I	0.000
ENSPANG00000016413	Papio anubis	ENSPANG00000016413	I	0.000
ENSPSIG00000000373	Pelodiscus sinensis	ENSPSIG00000000373	I	0.000
Pvit_06802	Pogona vitticeps	Pvit_06802	I	0.000
ENSPPYG00000009828	Pongo abelii	ENSPPYG00000009828	I	0.000
CEBPG	Pteropus vampyrus	ENSPVAG00000012689	I	0.000
Cebpg	Rattus norvegicus	ENSRNOG00000021144	I	0.000
ENSSHAG00000014577	Sarcophilus harrisii	ENSSHAG00000014577	I	0.000
CEBPG	Sorex araneus	ENSSARG00000004224	I	0.000
CEBPG	Sus scrofa	ENSSSCG00000002867	I	0.000
CEBPG	Taeniopygia guttata	ENSTGUG00000009474	I	0.000
cebpg	Takifugu rubripes	ENSTRUG00000006448	I	0.000
ENSTSYG00000002513	Tarsius syrichta	ENSTSYG00000002513	I	0.000
tetur11g01620	Tetranychus urticae	tetur11g01620	I	0.000
tetur02g05060	Tetranychus urticae	tetur02g05060	I	0.000
cebpg	Tetraodon nigroviridis	ENSTNIG00000001629	I	0.000
TC009211	Tribolium castaneum	TC009211	I	0.000
Tal_R011314	Tyto alba	Tal_R011314	I	0.000
CEBPG	Vicugna pacos	ENSVPAG00000007215	I	0.000
cebpg.L	Xenopus laevis	XB-GENE-6077777	I	0.000
cebpg	Xenopus tropicalis	XB-GENE-919758	I	0.000
ENSXMAG00000019691	Xiphophorus maculatus	ENSXMAG00000019691	I	0.000

HOXC13 (Canis familiaris) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

275 Related TFs

HOXC13 **(Canis familiaris)
Homeodomain**