ENSCING00000005828 (Ciona intestinalis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSCING00000005828 T207827_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.862 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.862 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.862 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.862 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.862 0.912
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.862 0.912
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.862 0.912
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.862 0.912
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.862 0.912
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.861 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.861 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.861 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.861 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.861 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.861 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.861 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.855 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCINP00000012025 Homeodomain 205 261

Links

Other Homeodomain family TFs
Other Ciona intestinalis TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AB07639.1 Alternaria brassicicola AB07639.1 I
e_gw1.00083.502.1 Aspergillus carbonarius e_gw1.00083.502.1 I
ACLA_026280 Aspergillus clavatus CADACLAG00002102 I
AFUA_1G09190 Aspergillus fumigatus CADAFUAG00007026 I
ANIA_01368 Aspergillus nidulans CADANIAG00001243 D
CADANGAG00006390 Aspergillus niger CADANGAG00006390 I
EURHEDRAFT_506166 Aspergillus ruber EURHEDRAFT_506166 I
COCC4DRAFT_30331 Bipolaris maydis COCC4DRAFT_30331 I
COCMIDRAFT_82593 Bipolaris oryzae COCMIDRAFT_82593 I
COCSADRAFT_39114 Bipolaris sorokiniana COCSADRAFT_39114 I
COCVIDRAFT_17657 Bipolaris victoriae COCVIDRAFT_17657 I
COCCADRAFT_33156 Bipolaris zeicola COCCADRAFT_33156 I
BDDG_02608 Blastomyces dermatitidis BDDG_02608 I
PVAR5_4509 Byssochlamys spectabilis PVAR5_4509 I
A1O1_05801 Capronia coronata A1O1_05801 I
A1O3_03555 Capronia epimyces A1O3_03555 I
PV04_01175 Capronia semiimmersa PV04_01175 I
Z519_09046 Cladophialophora bantiana Z519_09046 I
G647_00903 Cladophialophora carrionii G647_00903 I
A1O5_06619 Cladophialophora psammophila A1O5_06619 I
A1O7_00849 Cladophialophora yegresii A1O7_00849 I
CIMG_07148 Coccidioides immitis CIMG_07148 I
CPC735_034820 Coccidioides posadasii CPC735_034820 I
HMPREF1541_00475 Cyphellophora europaea HMPREF1541_00475 I
EPUS_02475 Endocarpon pusillum EPUS_02475 N
HMPREF1120_02804 Exophiala dermatitidis HMPREF1120_02804 I
PV10_08753 Exophiala mesophila PV10_08753 I
PV06_02913 Exophiala oligosperma PV06_02913 I
PV11_07970 Exophiala sideris PV11_07970 I
PV08_05229 Exophiala spinifera PV08_05229 I
PV05_11903 Exophiala xenobiotica PV05_11903 N
Z517_07725 Fonsecaea pedrosoi Z517_07725 I
HCBG_05364 Histoplasma capsulatum HCBG_05364 I
LEMA_P054920.1 Leptosphaeria maculans LEMA_P054920.1 I
PABG_06647 Paracoccidioides brasiliensis PABG_06647 I
Pc16g02310 Penicillium chrysogenum Pc16g02310 I
PDIP_41390 Penicillium digitatum PDIP_41390 I
PDE_06784 Penicillium oxalicum PDE_06784 I
PCH_Pc16g02310 Penicillium rubens PCH_Pc16g02310 I
PTRG_00425 Pyrenophora triticirepentis PTRG_00425 I
SETTUDRAFT_97479 Setosphaeria turcica SETTUDRAFT_97479 I
TSTA_035040 Talaromyces stipitatus TSTA_035040 I
UREG_05754 Uncinocarpus reesii UREG_05754 I