six3a (Danio rerio)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSDARG00000058008 T208649_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 1.000
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 1.000
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 1.000
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 1.000
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.947
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.947
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.947
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.947
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.982
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.982
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.982
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.965
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000075254 Homeodomain 169 225

Links

Other Homeodomain family TFs
Other Danio rerio TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG010381.1 Alligator sinensis Alligator_sinensis_CCG010381.1 I
AB04741.1 Alternaria brassicicola AB04741.1 I
Aqu1.225495 Amphimedon queenslandica Aqu1.225495 I
ENSAPLG00000010674 Anas platyrhynchos ENSAPLG00000010674 I
Afo_R011092 Aptenodytes forsteri Afo_R011092 I
Afo_R009272 Aptenodytes forsteri Afo_R009272 I
ATEG_05203 Aspergillus terreus CADATEAG00005116 I
ENSAMXG00000000335 Astyanax mexicanus ENSAMXG00000000335 I
COCC4DRAFT_49159 Bipolaris maydis COCC4DRAFT_49159 I
COCMIDRAFT_53102 Bipolaris oryzae COCMIDRAFT_53102 I
COCSADRAFT_107886 Bipolaris sorokiniana COCSADRAFT_107886 I
COCVIDRAFT_49416 Bipolaris victoriae COCVIDRAFT_49416 I
COCCADRAFT_44321 Bipolaris zeicola COCCADRAFT_44321 I
estExt_fgenesh2_pg.C_2210037 Branchiostoma floridae estExt_fgenesh2_pg.C_2210037 I
Brh_R000015 Buceros rhinoceros Brh_R000015 I
Brh_R010356 Buceros rhinoceros Brh_R010356 I
Aan_R003869 Calypte anna Aan_R003869 I
Aan_R015659 Calypte anna Aan_R015659 I
ENSCAFG00000010422 Canis familiaris ENSCAFG00000010422 I
CapteG88319 Capitella teleta CapteG88319 I
CapteG70907 Capitella teleta CapteG70907 I
CapteG49895 Capitella teleta CapteG49895 I
CapteG100741 Capitella teleta CapteG100741 I
ENSCSAG00000011743 Chlorocebus sabaeus ENSCSAG00000011743 I
Z519_11142 Cladophialophora bantiana Z519_11142 I
estExt_Genewise1.C_110663 Cochliobolus heterostrophus C5 estExt_Genewise1.C_110663 I
CCM_02544 Cordyceps militaris CCM_02544 I
CGI_10011802 Crassostrea gigas CGI_10011802 I
IRX3 Dasypus novemcinctus ENSDNOG00000012985 I
DICVIV_07073 Dictyocaulus viviparus DICVIV_07073 N
DILT_0000254701 Diphyllobothrium latum DILT_0000254701 I
DOTSEDRAFT_78718 Dothistroma septosporum DOTSEDRAFT_78718 I
ECPE_0000388901 Echinostoma caproni ECPE_0000388901 I
D915_00592 Fasciola hepatica D915_00592 I
D915_04768 Fasciola hepatica D915_04768 I
D915_05481 Fasciola hepatica D915_05481 I
FFUJ_12565 Fusarium fujikuroi FFUJ_12565 I
FGRRES_17555 Fusarium graminearum FGRRES_17555 I
FGRRES_07914 Fusarium graminearum FGRRES_07914 D
FOXG_13545 Fusarium oxysporum FOXG_13545 I
irx7 Gasterosteus aculeatus ENSGACG00000011160 I
Gfo_R005354 Geospiza fortis Gfo_R005354 I
Gfo_R014865 Geospiza fortis Gfo_R014865 I
HMEL002096 Heliconius melpomene HMEL002096 I
HelroG153600 Helobdella robusta HelroG153600 I
HelroG171177 Helobdella robusta HelroG171177 I
TTAC_0000670801 Hydatigera taeniaeformis TTAC_0000670801 I
HDID_0000776001 Hymenolepis diminuta HDID_0000776001 I
HmN_000921700 Hymenolepis microstoma HmN_000921700 I
HmN_000922600 Hymenolepis microstoma HmN_000922600 I
HNAJ_0001179801 Hymenolepis nana HNAJ_0001179801 I
ISCW017111 Ixodes scapularis ISCW017111 I
ENSLOCG00000006946 Lepisosteus oculatus ENSLOCG00000006946 I
ENSMEUG00000004557 Macropus eugenii ENSMEUG00000004557 I
ENSMEUG00000014864 Macropus eugenii ENSMEUG00000014864 I
ENSMPUG00000007638 Mustela putorius furo ENSMPUG00000007638 I
Myotis_brandtii_Irx1_10035798 Myotis brandtii Myotis_brandtii_Irx1_10035798 I
Ocbimv22006483m.g Octopus bimaculoides Ocbimv22006483m.g I
Ogr18478 Ophisaurus gracilis Ogr18478 I
ENSONIG00000016567 Oreochromis niloticus ENSONIG00000016567 I
ENSONIG00000018672 Oreochromis niloticus ENSONIG00000018672 I
ENSOANG00000029378 Ornithorhynchus anatinus ENSOANG00000029378 I
ENSOARG00000016067 Ovis aries ENSOARG00000016067 I
SNOG_06363 Phaeosphaeria nodorum SNOG_06363 I
ENSPFOG00000013469 Poecilia formosa ENSPFOG00000013469 I
ENSPFOG00000006638 Poecilia formosa ENSPFOG00000006638 I
MKX Procavia capensis ENSPCAG00000014719 I
PXEA_0002454601 Protopolystoma xenopodis PXEA_0002454601 I
PTT_11733 Pyrenophora teres PTT_11733 I
Irx3 Rattus norvegicus ENSRNOG00000011533 I
SSLN_0000846501 Schistocephalus solidus SSLN_0000846501 I
SCUD_0000714801 Schistosoma curassoni SCUD_0000714801 I
A_07284 Schistosoma haematobium A_07284 I
Sjc_0052220 Schistosoma japonicum Sjc_0052220 I
SMRZ_0000148301 Schistosoma margrebowiei SMRZ_0000148301 I
SMTD_0002243001 Schistosoma mattheei SMTD_0002243001 I
SETTUDRAFT_162538 Setosphaeria turcica SETTUDRAFT_162538 I
SPER_0001325101 Spirometra erinaceieuropaei SPER_0001325101 I
SNOG_06363 Stagonospora nodorum SNOG_06363 I
L596_g21727 Steinernema carpocapsae L596_g21727 I
L893_g31416 Steinernema glaseri L893_g31416 I
L898_g17064 Steinernema monticolum L898_g17064 I
L892_g27282 Steinernema scapterisci L892_g27282 I
SMAR007687 Strigamia maritima SMAR007687 I
SMAR002833 Strigamia maritima SMAR002833 I
SMUV_0000063001 Syphacia muris SMUV_0000063001 I
TASK_0000658901 Taenia asiatica TASK_0000658901 I
TsM_000760900 Taenia solium TsM_000760900 I
irx7 Takifugu rubripes ENSTRUG00000007926 I
mkxb Takifugu rubripes ENSTRUG00000004166 I
mkxb Tetraodon nigroviridis ENSTNIG00000007881 I
ENSTNIG00000000637 Tetraodon nigroviridis ENSTNIG00000000637 I
MKX Tupaia belangeri ENSTBEG00000008150 I
Tal_R007088 Tyto alba Tal_R007088 I
irx1.L Xenopus laevis XB-GENE-865648 I
ENSXMAG00000012663 Xiphophorus maculatus ENSXMAG00000012663 I
ENSXMAG00000006967 Xiphophorus maculatus ENSXMAG00000006967 I