HOXB13 (Equus caballus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSECAG00000013619 T209136_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HOXB13
M02092_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Weirauch et al.(2014)
pTH5808 		0.866 0.982
Hoxb13
M00505_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb13_3479 		0.866 0.982
HOXB13
M03175_2.00 		Homo sapiens
DTTTTATKGG
CCMATAAAAH		 SELEX
Jolma et al.(2013)
HOXB13_1 		0.866 0.982
HOXB13
M03176_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXB13_2 		0.866 0.982
HOXB13
M05201_2.00 		Homo sapiens
DTTTTATKGGN
NCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1 		0.866 0.982
HOXB13
M05202_2.00 		Homo sapiens
NCTCGTAAAHH
DDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2 		0.866 0.982
HOXB13
M09149_2.00 		Homo sapiens
TTTTATDRSN
NSYHATAAAA		 Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A 		0.866 0.982
HOXB13
M05203_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX 		0.866 0.982
Hoxc13
M00389_2.00 		Mus musculus
NTTWAYDRNN
NNYHRTWAAN		 PBM
Berger et al.(2008)
Hoxc13_3127 		0.712 0.789
HOXC13
M03129_2.00 		Homo sapiens
NTTTTATTRS
SYAATAAAAN		 SELEX
Jolma et al.(2013)
HOXC13_1 		0.712 0.789
HOXC13
M03130_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXC13_2 		0.712 0.789
HOXC13
M05072_2.00 		Homo sapiens
RKTTTATKGSN
NSCMATAAAMY		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1 		0.712 0.789
HOXC13
M05073_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2 		0.712 0.789
HOXC13
M10680_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC13_Q2 		0.712 0.789
HOXC13
M05074_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX 		0.712 0.789
Hoxa13
M00473_2.00 		Mus musculus
NTTWAYDRN
NYHRTWAAN		 PBM
Berger et al.(2008)
Hoxa13_3126 		0.708 0.825
HOXA13
M03098_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_1 		0.708 0.825
HOXA13
M03099_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_2 		0.708 0.825
HOXA13
M03100_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_3 		0.708 0.825
HOXA13
M03101_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_4 		0.708 0.825
HOXA13
M04977_2.00 		Homo sapiens
DTTTTATKGGB
VCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1 		0.708 0.825
HOXA13
M04978_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2 		0.708 0.825
HOXA13
M04981_2.00 		Homo sapiens
DTTTTATKRSN
NSYMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1 		0.708 0.825
HOXA13
M04982_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2 		0.708 0.825
HOXA13
M09134_2.00 		Homo sapiens
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C 		0.708 0.825
Hoxa13
M09202_2.00 		Mus musculus
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C 		0.708 0.825
HOXA13
M10653_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_01 		0.708 0.825
HOXA13
M10654_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_02 		0.708 0.825
HOXA13
M04979_2.00 		Homo sapiens
DTTTTATTRSN
NSYAATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1 		0.708 0.825
HOXA13
M04980_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2 		0.708 0.825
HOXA13
M04983_2.00 		Homo sapiens
DKTTTATTGBN
NVCAATAAAMH		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1 		0.708 0.825
HOXA13
M04984_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2 		0.708 0.825
HOXD13
M00299_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_REF 		0.704 0.789
Hoxd13
M00394_2.00 		Mus musculus
NWTHRYDDN
NHHRYDAWN		 PBM
Berger et al.(2008)
Hoxd13_2356 		0.704 0.789
HOXD13
M03141_2.00 		Homo sapiens
DTTTTATKRS
SYMATAAAAH		 SELEX
Jolma et al.(2013)
HOXD13_1 		0.704 0.789
HOXD13
M03142_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXD13_2 		0.704 0.789
Hoxd13
M03247_2.00 		Mus musculus
DKTTTATTRS
SYAATAAAMH		 SELEX
Jolma et al.(2013)
Hoxd13_1 		0.704 0.789
Hoxd13
M03248_2.00 		Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH		 SELEX
Jolma et al.(2013)
Hoxd13_2 		0.704 0.789
HOXD13
M05122_2.00 		Homo sapiens
GKTTTATKGSS
SSCMATAAAMC		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1 		0.704 0.789
HOXD13
M05123_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2 		0.704 0.789
HOXD13
M10689_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD13_Q6 		0.704 0.789
HOXD13
M00295_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_N298S 		0.704 0.789
HOXD13
M05124_2.00 		Homo sapiens
DDTTTATTRBB
VVYAATAAAHH		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1 		0.704 0.789
HOXD13
M05125_2.00 		Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2 		0.704 0.789
HOXD13
M00300_2.00 		Homo sapiens
WTTTATDR
YHATAAAW		 PBM
Barrera et al.(2016)
HOXD13_S316C 		0.704 0.772
HOXD13
M00293_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_I297V 		0.703 0.772
HOXD13
M00298_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_R306W 		0.696 0.772
hoxd13a
M02081_2.00 		Danio rerio
WTTTATDR
YHATAAAW		 PBM
Weirauch et al.(2014)
pTH6143 		0.690 0.719
HOXD13
M00294_2.00 		Homo sapiens
THGTWAAW
WTTWACDA		 PBM
Barrera et al.(2016)
HOXD13_I322L 		0.686 0.772
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000011354 Homeodomain 218 274

Links

Other Homeodomain family TFs
Other Equus caballus TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TVAG_528950 Trichomonas vaginalis TVAG_528950 I
TVAG_333410 Trichomonas vaginalis TVAG_333410 N
TVAG_356580 Trichomonas vaginalis TVAG_356580 I
TVAG_384340 Trichomonas vaginalis TVAG_384340 I
TVAG_398170 Trichomonas vaginalis TVAG_398170 I
TVAG_446510 Trichomonas vaginalis TVAG_446510 I
TVAG_467100 Trichomonas vaginalis TVAG_467100 N
TVAG_503000 Trichomonas vaginalis TVAG_503000 N
TVAG_514140 Trichomonas vaginalis TVAG_514140 I
TVAG_310350 Trichomonas vaginalis TVAG_310350 N
TVAG_536530 Trichomonas vaginalis TVAG_536530 N
TVAG_555550 Trichomonas vaginalis TVAG_555550 N
TVAG_556150 Trichomonas vaginalis TVAG_556150 I
TVAG_557940 Trichomonas vaginalis TVAG_557940 N
TVAG_567890 Trichomonas vaginalis TVAG_567890 N
TVAG_574680 Trichomonas vaginalis TVAG_574680 N
TVAG_583920 Trichomonas vaginalis TVAG_583920 N
TVAG_591110 Trichomonas vaginalis TVAG_591110 N
TVAG_182100 Trichomonas vaginalis TVAG_182100 N
TVAG_022950 Trichomonas vaginalis TVAG_022950 N
TVAG_058570 Trichomonas vaginalis TVAG_058570 N
TVAG_072910 Trichomonas vaginalis TVAG_072910 N
TVAG_079810 Trichomonas vaginalis TVAG_079810 N
TVAG_085400 Trichomonas vaginalis TVAG_085400 I
TVAG_141650 Trichomonas vaginalis TVAG_141650 N
TVAG_162250 Trichomonas vaginalis TVAG_162250 N
TVAG_167420 Trichomonas vaginalis TVAG_167420 N
TVAG_008200 Trichomonas vaginalis TVAG_008200 N
TVAG_208090 Trichomonas vaginalis TVAG_208090 I
TVAG_227410 Trichomonas vaginalis TVAG_227410 N
TVAG_248200 Trichomonas vaginalis TVAG_248200 N
TVAG_261460 Trichomonas vaginalis TVAG_261460 N
TVAG_271460 Trichomonas vaginalis TVAG_271460 N
TVAG_288340 Trichomonas vaginalis TVAG_288340 N
TVAG_299020 Trichomonas vaginalis TVAG_299020 N