pbx4 (Gasterosteus aculeatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSGACG00000010133 T210090_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 1.000
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 0.982
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 0.982
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 0.982
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 0.982
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.982
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 0.982
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.982
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.982
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 0.982
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 0.982
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 0.982
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 0.982
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 0.982
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 0.982
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 0.982
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 0.982
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 0.982
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.947
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.930
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.930
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.930
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.930
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.930
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.895
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.895
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.877
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000013382 Homeodomain 237 296

Links

Other Homeodomain family TFs
Other Gasterosteus aculeatus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
COCMIDRAFT_83175 Bipolaris oryzae COCMIDRAFT_83175 N
COCVIDRAFT_27237 Bipolaris victoriae COCVIDRAFT_27237 N
COCCADRAFT_107162 Bipolaris zeicola COCCADRAFT_107162 N
BGHDH14_bgh01392 Blumeria graminis BGHDH14_bgh01392 N
Bcin14g01790 Botrytis cinerea Bcin14g01790 N
CHGG_02666 Chaetomium globosum CHGG_02666 N
CPUR_06254 Claviceps purpurea CPUR_06254 N
CFIO01_02399 Colletotrichum fioriniae CFIO01_02399 N
GLRG_07521 Colletotrichum graminicola GLRG_07521 N
CH063_10919 Colletotrichum higginsianum CH063_10919 N
Cob_00186 Colletotrichum orbiculare Cob_00186 N
CSUB01_07808 Colletotrichum sublineola CSUB01_07808 N
EV44_g2643 Erysiphe necator EV44_g2643 N
FFUJ_07085 Fusarium fujikuroi FFUJ_07085 N
FOXG_05039 Fusarium oxysporum FOXG_05039 N
NechaG104560 Fusarium solani NechaG104560 N
FVEG_03094 Fusarium verticillioides FVEG_03094 N
M7I_5913 Glarea lozoyensis M7I_5913 N
MGG_02474 Magnaporthe oryzae MGG_02474 N
MBM_02170 Marssonina brunnea MBM_02170 N
MAC_09184 Metarhizium acridum MAC_09184 N
MAM_08248 Metarhizium album MAM_08248 N
MANI_016295 Metarhizium anisopliae MANI_016295 N
MBR_04029 Metarhizium brunneum MBR_04029 N
MGU_06622 Metarhizium guizhouense MGU_06622 N
MAJ_08041 Metarhizium majus MAJ_08041 N
X797_004608 Metarhizium robertsii X797_004608 N
MYCTH_2300604 Myceliophthora thermophila MYCTH_2300604 N
estExt_fgenesh1_pm.C_sca_5_chr5_3_00364 Nectria haematococca estExt_fgenesh1_pm.C_sca_5_chr5_3_00364 N
OIDMADRAFT_16851 Oidiodendron maius OIDMADRAFT_16851 N
OCS_00818 Ophiocordyceps sinensis OCS_00818 N
GMDG_00231 Pseudogymnoascus destructans GMDG_00231 N
SBOR_5838 Sclerotinia borealis SBOR_5838 N
SS1G_10276 Sclerotinia sclerotiorum SS1G_10276 N
S40288_01275 Stachybotrys chartarum S40288_01275 N
S40285_04464 Stachybotrys chlorohalonata S40285_04464 N
THITE_2106736 Thielavia terrestris THITE_2106736 N
VHEMI00901 Torrubiella hemipterigena VHEMI00901 N
TRIATDRAFT_184734 Trichoderma atroviride TRIATDRAFT_184734 N
TRIREDRAFT_5675 Trichoderma reesei TRIREDRAFT_5675 N
TRIVIDRAFT_55061 Trichoderma virens TRIVIDRAFT_55061 N
UV8b_6781 Ustilaginoidea virens UV8b_6781 N
VDBG_00641 Verticillium albo atrum VDBG_00641 N
VDBG_00641 Verticillium alfalfae VDBG_00641 N
VDAG_00255 Verticillium dahliae VDAG_00255 N