CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PBX1
(
Myotis lucifugus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMLUG00000006941
T211739_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PBX3
M08132_2.00
Homo sapiens
NNNTGAGTGACAGSNNN
NNNSCTGTCACTCANNN
ChIP-seq
Mathelier et al.(2014)
MA1114.1
0.838
0.909
PBX3
M07971_2.00
Homo sapiens
NNBDRCCAATSRVVD
HBBYSATTGGYHVNN
ChIP-seq
Gerstein et al.(2012)
GM12878_PBX3_HudsonAlpha
0.838
0.909
PBX3
M09155_2.00
Homo sapiens
DGABKGRCRGB
VCYGYCMVTCH
Misc
Kulakovskiy et al.(2013)
PBX3_HUMAN.H11MO.0.A
0.838
0.909
PBX3
M09560_2.00
Homo sapiens
NTGABTGACAGB
VCTGTCAVTCAN
Misc
Heinz et al.(2010)
GM12878-PBX3_GSE32465
0.838
0.909
PBX3
M10732_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_02
0.838
0.909
PBX3
M10733_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_03
0.838
0.909
PBX3
M10734_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PBX3_04
0.838
0.909
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMLUP00000006342
Homeodomain
148
196
RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQSIV
ENSMLUP00000006342
Homeodomain
208
227
GSPTSCVSNWFGNKRIRYKK
Links
Other
Homeodomain
family TFs
Other
Myotis lucifugus
TFs
20 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy