PBX1 (Monodelphis domestica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMODG00000001238 T212056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 1.000
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 1.000
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 1.000
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 1.000
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 1.000
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 1.000
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 1.000
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 1.000
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 1.000
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 1.000
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 1.000
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 1.000
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 1.000
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.877
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.877
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMODP00000001483 Homeodomain 129 188
ENSMODP00000036766 Homeodomain 129 188

Links

Other Homeodomain family TFs
Other Monodelphis domestica TFs

436 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.000
Bo4g042390 Brassica oleracea Bo4g042390 I 0.000
Bra005470 Brassica rapa Bra005470 I 0.000
Bra021880 Brassica rapa Bra021880 I 0.000
PK26639.1 Cannabis sativa PK26639.1 I 0.000
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.000
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.000
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.000
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.000
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.000
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.000
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.000
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.000
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.000
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.000
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.000
Lus10039846.g Linum usitatissimum Lus10039846.g I 0.000
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.000
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.000
MDP0000861601 Malus domestica MDP0000861601 I 0.000
MDP0000156994 Malus domestica MDP0000156994 I 0.000
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.000
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.000
OBART04G20940 Oryza barthii OBART04G20940 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.000
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.000
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.000
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.000
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.000
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.000
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.000
SPL7 Oryza sativa OS04G0551500 I 0.000
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.000
Pm010075 Prunus mume Pm010075 I 0.000
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.000
29983.m003158 Ricinus communis 29983.m003158 I 0.000
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.000
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.000
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.000
TCM_029832 Theobroma cacao TCM_029832 I 0.000
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000