RAX (Oryctolagus cuniculus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOCUG00000010455 T213153_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.809 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.809 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.809 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.809 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.809 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.809 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.809 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.809 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.809 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.391
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOCUP00000009003 Homeodomain 133 178

Links

Other Homeodomain family TFs
Other Oryctolagus cuniculus TFs

1244 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I
BZO2H3 Arabidopsis lyrata fgenesh2_kg.6__2797__AT5G28770.2 I
Bo7g093030 Brassica oleracea Bo7g093030 I
Bra010010 Brassica rapa Bra010010 I
PK07533.1 Cannabis sativa PK07533.1 I
PK05128.1 Cannabis sativa PK05128.1 D
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I
evm.TU.supercontig_52.101 Carica papaya evm.TU.supercontig_52.101 I
Ca_03753 Cicer arietinum Ca_03753 I
Cla020112 Citrullus lanatus Cla020112 I
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I
Cucsa.133290 Cucumis sativus Cucsa.133290 I
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I
GLYMA03G40730 Glycine max GLYMA03G40730 I
GLYMA19G43420 Glycine max GLYMA19G43420 I
GLYMA11G12240 Glycine max GLYMA11G12240 I
GLYMA12G04440 Glycine max GLYMA12G04440 I
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I
MLOC_52125 Hordeum vulgare MLOC_52125 N
Lus10015913.g Linum usitatissimum Lus10015913.g I
Lus10006590.g Linum usitatissimum Lus10006590.g I
MDP0000270365 Malus domestica MDP0000270365 I
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I
mgf003466m Mimulus guttatus mgf003466m I
mgf009803m Mimulus guttatus mgf009803m I
mgf018581m Mimulus guttatus mgf018581m I
GSMUA_Achr10G12910_001 Musa acuminata GSMUA_Achr10G12910_001 I
GSMUA_Achr7G07650_001 Musa acuminata GSMUA_Achr7G07650_001 I
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I
GSMUA_Achr2G06540_001 Musa acuminata GSMUA_Achr2G06540_001 I
GSMUA_Achr1G25340_001 Musa acuminata GSMUA_Achr1G25340_001 I
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I
GSMUA_Achr11G20700_001 Musa acuminata GSMUA_Achr11G20700_001 I
GSMUA_Achr11G05140_001 Musa acuminata GSMUA_Achr11G05140_001 I
OB05G12090 Oryza brachyantha OB05G12090 N
estExt_fgenesh1_pg.C_2060068 Physcomitrella patens estExt_fgenesh1_pg.C_2060068 I
gw1.83.117.1 Physcomitrella patens gw1.83.117.1 I
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I
30131.m007078 Ricinus communis 30131.m007078 I
29598.m000468 Ricinus communis 29598.m000468 I
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I
SapurV1A.0396s0080 Salix purpurea SapurV1A.0396s0080 I
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I
SELMODRAFT_17886 Selaginella moellendorffii SELMODRAFT_17886 I
Si022331m.g Setaria italica Si022331m.g I
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I
Sb08g020600 Sorghum bicolor Sb08g020600 I
TCM_026349 Theobroma cacao TCM_026349 I
Traes_1AS_94B6230FB1 Triticum aestivum Traes_1AS_94B6230FB1 N
Traes_1BS_A44C97E0F Triticum aestivum Traes_1BS_A44C97E0F N
Traes_1DS_62FDD3493 Triticum aestivum Traes_1DS_62FDD3493 N
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I
VIT_05s0077g01140 Vitis vinifera VIT_05s0077g01140 I
BZO2H3 Vitis vinifera VIT_14s0030g02200 I