ENSOPRG00000004641 (Ochotona princeps)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSOPRG00000004641 T213726_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.735 0.422
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.735 0.422
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.735 0.422
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.735 0.422
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.735 0.422
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.735 0.422
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.735 0.422
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.735 0.422
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.735 0.422
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.680 0.244
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.680 0.244
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.680 0.244
Lhx1
M00405_2.00 		Mus musculus
TRATDRNNN
NNNYHATYA		 PBM
Berger et al.(2008)
Lhx1_2240 		0.360 1.000
Lhx5
M00445_2.00 		Mus musculus
TAATKRNNN
NNNYMATTA		 PBM
Berger et al.(2008)
Lhx5_2279 		0.360 1.000
LHX1
M05410_2.00 		Homo sapiens
NTRATBRN
NYVATYAN		 SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX 		0.360 1.000
LHX5
M04936_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX 		0.360 1.000
LHX1
M05411_2.00 		Homo sapiens
NHRAYGHN
NDCRTYDN		 SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX 		0.360 1.000
LHX5
M04937_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1 		0.360 1.000
LHX5
M04938_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2 		0.360 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000004260 Homeodomain 123 168

Links

Other Homeodomain family TFs
Other Ochotona princeps TFs

1327 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.contig_33612 Carica papaya evm.TU.contig_33612 I 0.000
gene30741-v1.0-hybrid Fragaria vesca gene30741-v1.0-hybrid I 0.000
gene31068-v1.0-hybrid Fragaria vesca gene31068-v1.0-hybrid N 0.000
MDP0000135652 Malus domestica MDP0000135652 I 0.000
MDP0000144516 Malus domestica MDP0000144516 I 0.000