six7 (Oryzias latipes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSORLG00000007974 T213899_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.965
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.965
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.965
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.965
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 0.912
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 0.912
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 0.912
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 0.912
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 0.912
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.947
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.947
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.947
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.947
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.947
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.947
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.912
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.930
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000010004 Homeodomain 129 185

Links

Other Homeodomain family TFs
Other Oryzias latipes TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL014670 Aedes aegypti AAEL014670 I
Alligator_sinensis_CCG020461.1 Alligator sinensis Alligator_sinensis_CCG020461.1 I
TEAD3 Anolis carolinensis ENSACAG00000009142 I
ACHR008952 Anopheles christyi ACHR008952 I
AEPI008594 Anopheles epiroticus AEPI008594 I
AGAP000512 Anopheles gambiae AGAP000512 I
AQUA008219 Anopheles quadriannulatus AQUA008219 I
BGIBMGA001129 Bombyx mori BGIBMGA001129 I
e_gw.291.69.1 Branchiostoma floridae e_gw.291.69.1 I
CBN00477 Caenorhabditis brenneri CBN00477 I
CBN16859 Caenorhabditis brenneri CBN16859 I
CBG02541 Caenorhabditis briggsae CBG02541 I
egl-44 Caenorhabditis elegans WBGene00001208 I
TEAD3 Canis familiaris ENSCAFG00000001326 I
ENSCING00000019408 Ciona intestinalis ENSCING00000019408 I
ENSCSAVG00000007634 Ciona savignyi ENSCSAVG00000007634 I
CpipJ_CPIJ013490 Culex pipiens CpipJ_CPIJ013490 I
CPIJ013490 Culex quinquefasciatus CPIJ013490 I
tead1b Danio rerio ENSDARG00000059483 I
tead1a Danio rerio ENSDARG00000028159 I
Tead3 Dipodomys ordii ENSDORG00000010798 I
ENSDORG00000004435 Dipodomys ordii ENSDORG00000004435 I
sd Drosophila melanogaster FBgn0003345 D
GA21152 Drosophila pseudoobscura FBgn0081140 I
ECANG7_01760 Echinococcus canadensis ECANG7_01760 I
TEAD3 Equus caballus ENSECAG00000015056 I
ENSEEUG00000001836 Erinaceus europaeus ENSEEUG00000001836 I
TEAD2 Erinaceus europaeus ENSEEUG00000012244 I
D915_00206 Fasciola hepatica D915_00206 I
ENSFALG00000003635 Ficedula albicollis ENSFALG00000003635 I
ENSGMOG00000010731 Gadus morhua ENSGMOG00000010731 I
ENSGMOG00000015271 Gadus morhua ENSGMOG00000015271 I
tead3a Gasterosteus aculeatus ENSGACG00000009758 I
tead1a Gasterosteus aculeatus ENSGACG00000003385 I
TEAD3 Gorilla gorilla ENSGGOG00000001847 I
HHAL001589-PA Halyomorpha halys HHAL001589-PA I
HelroG146479 Helobdella robusta HelroG146479 I
TEAD4 Homo sapiens ENSG00000197905 D
ENSLACG00000016444 Latimeria chalumnae ENSLACG00000016444 I
ENSLACG00000013349 Latimeria chalumnae ENSLACG00000013349 I
ENSLOCG00000009736 Lepisosteus oculatus ENSLOCG00000009736 I
TEAD3 Loxodonta africana ENSLAFG00000014818 I
ENSP00000349828 Macaca fascicularis ENSP00000349828 I
TEAD4 Macaca mulatta ENSMMUG00000011299 I
TEAD3 Macaca mulatta ENSMMUG00000015909 I
TEAD4 Meleagris gallopavo ENSMGAG00000013910 I
TEAD1 Microcebus murinus ENSMICG00000007178 I
TEAD3 Microcebus murinus ENSMICG00000000029 I
Tead1 Mus musculus ENSMUSG00000055320 D
Tead2 Mus musculus ENSMUSG00000030796 D
Tead4 Mus musculus ENSMUSG00000030353 D
NEMVEDRAFT_v1g86806 Nematostella vectensis NEMVEDRAFT_v1g86806 I
ENSNLEG00000008666 Nomascus leucogenys ENSNLEG00000008666 I
ENSONIG00000014698 Oreochromis niloticus ENSONIG00000014698 I
TEAD4 Ornithorhynchus anatinus ENSOANG00000001389 I
TEAD4 Oryzias latipes ENSORLG00000002553 I
TEAD3 Otolemur garnettii ENSOGAG00000002943 I
TEAD3 Pan troglodytes ENSPTRG00000018086 I
ENSPANG00000018522 Papio anubis ENSPANG00000018522 I
ENSPSIG00000006176 Pelodiscus sinensis ENSPSIG00000006176 I
PPAI001408 Phlebotomus papatasi PPAI001408 I
ENSPFOG00000013997 Poecilia formosa ENSPFOG00000013997 I
ENSPFOG00000003170 Poecilia formosa ENSPFOG00000003170 I
Pvit_05988 Pogona vitticeps Pvit_05988 I
ENSPPYG00000016530 Pongo abelii ENSPPYG00000016530 I
TEAD3 Procavia capensis ENSPCAG00000010213 I
TEAD4 Procavia capensis ENSPCAG00000013738 I
TEAD1 Pteropus vampyrus ENSPVAG00000001503 I
TEAD3 Pteropus vampyrus ENSPVAG00000002764 I
nRc.2.0.1.g07693 Romanomermis culicivorax nRc.2.0.1.g07693 I
ENSSHAG00000015930 Sarcophilus harrisii ENSSHAG00000015930 I
SMRZ_0002317401 Schistosoma margrebowiei SMRZ_0002317401 I
SMTD_0001953201 Schistosoma mattheei SMTD_0001953201 I
SROB_0002407501 Schistosoma rodhaini SROB_0002407501 I
TEAD3 Sorex araneus ENSSARG00000008305 I
SMAR011013 Strigamia maritima SMAR011013 I
SMAR013465 Strigamia maritima SMAR013465 I
TEAD2 Sus scrofa ENSSSCG00000025568 I
TsM_000210300 Taenia solium TsM_000210300 I
TEAD3 Taeniopygia guttata ENSTGUG00000001691 I
tead1a Takifugu rubripes ENSTRUG00000005940 I
tead3a Takifugu rubripes ENSTRUG00000011546 I
TEAD4 Takifugu rubripes ENSTRUG00000016489 I
tead3b Takifugu rubripes ENSTRUG00000018177 I
ENSTSYG00000006048 Tarsius syrichta ENSTSYG00000006048 I
D917_06432 Trichinella nativa D917_06432 I
EFV53558 Trichinella spiralis EFV53558 I
D918_02241 Trichuris suis D918_02241 I
TEAD3 Tursiops truncatus ENSTTRG00000009434 I
XP_002943057 Xenopus tropicalis XP_002943057 I
tead1 Xenopus tropicalis XB-GENE-5909149 I