RAX (Procavia capensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPCAG00000001152 T214197_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.809 0.644
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.809 0.644
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.809 0.644
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.809 0.644
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.809 0.644
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.809 0.644
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.809 0.644
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.809 0.644
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.809 0.644
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.737 0.400
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.737 0.400
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.737 0.400
Rax
M00426_2.00 		Mus musculus
NNTAATTRN
NYAATTANN		 PBM
Berger et al.(2008)
Rax_3443 		0.360 1.000
RAX
M03149_2.00 		Homo sapiens
NHTAATTRNN
NNYAATTADN		 SELEX
Jolma et al.(2013)
RAX_1 		0.360 1.000
RAX
M05142_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
RAX_eDBD_HT-SELEX 		0.360 1.000
Rax
M10773_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RAX_04 		0.360 1.000
RAX
M05143_2.00 		Homo sapiens
NTAAYRNN
NNYRTTAN		 SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_1 		0.360 1.000
RAX
M05144_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_2 		0.360 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000001049 Homeodomain 133 178

Links

Other Homeodomain family TFs
Other Procavia capensis TFs

1272 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.21.273.1 Fragilariopsis cylindrus gw1.21.273.1 N 0.000
estExt_Genewise1Plus.C_91152 Fragilariopsis cylindrus estExt_Genewise1Plus.C_91152 I 0.000
e_gw1.5.1185.1 Fragilariopsis cylindrus e_gw1.5.1185.1 N 0.000
e_gw1.21.303.1 Fragilariopsis cylindrus e_gw1.21.303.1 N 0.000
Ogr08578 Ophisaurus gracilis Ogr08578 I 0.000
HSF2 Phaeodactylum tricornutum Phatr3_J55070 N 0.000
Phatr3_Jdraft1650 Phaeodactylum tricornutum Phatr3_Jdraft1650 N 0.000
Phatr3_J49596 Phaeodactylum tricornutum Phatr3_J49596 N 0.000
Phatr3_J49594 Phaeodactylum tricornutum Phatr3_J49594 I 0.000
Phatr3_J49557 Phaeodactylum tricornutum Phatr3_J49557 N 0.000
Phatr3_J48667 Phaeodactylum tricornutum Phatr3_J48667 N 0.000
Phatr3_J44684 Phaeodactylum tricornutum Phatr3_J44684 N 0.000
Phatr3_J39794 Phaeodactylum tricornutum Phatr3_J39794 N 0.000
Phatr3_J39785 Phaeodactylum tricornutum Phatr3_J39785 N 0.000
Phatr3_EG02327 Phaeodactylum tricornutum Phatr3_EG02327 N 0.000
Phatr3_EG00672 Phaeodactylum tricornutum Phatr3_EG00672 N 0.000
ENSPFOG00000024243 Poecilia formosa ENSPFOG00000024243 I 0.000
Thaps12066 Thalassiosira pseudonana Thaps12066 N 0.000
Thaps22454 Thalassiosira pseudonana Thaps22454 I 0.000
Thaps22932 Thalassiosira pseudonana Thaps22932 N 0.000
Thaps264072 Thalassiosira pseudonana Thaps264072 N 0.000