ENSPMAG00000001979 (Petromyzon marinus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPMAG00000001979 T214588_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Isl2
M00458_2.00 		Mus musculus
NWDWDNN
NNHWHWN		 PBM
Berger et al.(2008)
Isl2_3430 		0.865 0.982
ISL2
M03177_2.00 		Homo sapiens
YTAAKTGB
VCAMTTAR		 SELEX
Jolma et al.(2013)
ISL2_1 		0.865 0.982
ISL1
M04908_2.00 		Homo sapiens
BTAAKTGS
SCAMTTAV		 SELEX
Yin et al.(2017)
ISL1_eDBD_HT-SELEX 		0.865 0.982
ISL1
M04910_2.00 		Homo sapiens
NTAAKTGS
SCAMTTAN		 SELEX
Yin et al.(2017)
ISL1_FL_HT-SELEX 		0.865 0.982
ISL2
M05204_2.00 		Homo sapiens
NTAAKTGS
SCAMTTAN		 SELEX
Yin et al.(2017)
ISL2_eDBD_HT-SELEX 		0.865 0.982
ISL1
M09128_2.00 		Homo sapiens
NYWRAKKGV
BCMMTYWRN		 Misc
Kulakovskiy et al.(2013)
ISL1_HUMAN.H11MO.0.A 		0.865 0.982
Isl1
M09209_2.00 		Mus musculus
NYWRAKKGV
BCMMTYWRN		 Misc
Kulakovskiy et al.(2013)
ISL1_MOUSE.H11MO.0.A 		0.865 0.982
Isl1
M09578_2.00 		Mus musculus
YTAAKKGV
BCMMTTAR		 Misc
Heinz et al.(2010)
Neuron-Isl1_GSE31456 		0.865 0.982
ISL1
M10634_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL1_Q3 		0.865 0.982
ISL1
M10635_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL1_Q6 		0.865 0.982
ISL1
M04909_2.00 		Homo sapiens
BTAAKTGS
SCAMTTAV		 SELEX
Yin et al.(2017)
ISL1_eDBD_Methyl-HT-SELEX 		0.865 0.982
ISL1
M04911_2.00 		Homo sapiens
BTAAKTGS
SCAMTTAV		 SELEX
Yin et al.(2017)
ISL1_FL_Methyl-HT-SELEX 		0.865 0.982
ISL2
M05205_2.00 		Homo sapiens
NTAAKTGN
NCAMTTAN		 SELEX
Yin et al.(2017)
ISL2_eDBD_Methyl-HT-SELEX 		0.865 0.982
ISL2B_ONCTS
M10798_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_02 		0.864 0.965
ISL2B_ONCTS
M10799_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_03 		0.864 0.965
ISL2B_ONCTS
M10800_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_04 		0.864 0.965
ISL2B_ONCTS
M10801_2.00 		Oncorhynchus tshawytscha Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ISL2_05 		0.864 0.965
tup
M06498_2.00 		Drosophila melanogaster
WTAATKG
CMATTAW		 B1H
Mathelier et al.(2014)
MA0248.1 		0.862 0.947
tup
M06270_2.00 		Drosophila melanogaster
SWTAATKG
CMATTAWS		 B1H
Zhu et al.(2011)
Tup_Cell_FBgn0003896 		0.862 0.947
tup
M06271_2.00 		Drosophila melanogaster
NYTAATKRV
BYMATTARN		 B1H
Zhu et al.(2011)
tup_SOLEXA_10_FBgn0003896 		0.862 0.947
tup
M06272_2.00 		Drosophila melanogaster
YTAATKR
YMATTAR		 B1H
Zhu et al.(2011)
Tup_SOLEXA_FBgn0003896 		0.862 0.947
CBG04010
M01242_2.00 		Caenorhabditis briggsae
NNKTAATDDMN
NKHHATTAMNN		 PBM
Lambert et al.(2019)
pTH11489 		0.835 0.772
NEMVEDRAFT_v1g81309
M02152_2.00 		Nematostella vectensis
NTAATDNNN
NNNHATTAN		 PBM
Weirauch et al.(2014)
pTH5477 		0.637 0.368
NOTO
M03241_2.00 		Homo sapiens
NNTAATKWRN
NYWMATTANN		 SELEX
Jolma et al.(2013)
NOTO_1 		0.631 0.368
NOTO
M05390_2.00 		Homo sapiens
BTAATKRV
BYMATTAV		 SELEX
Yin et al.(2017)
NOTO_eDBD_HT-SELEX 		0.631 0.368
NOTO
M05391_2.00 		Homo sapiens
BTMATKRV
BYMATKAV		 SELEX
Yin et al.(2017)
NOTO_eDBD_Methyl-HT-SELEX 		0.631 0.368
PHOX2B
M00278_2.00 		Homo sapiens
NNNNNRY
RYNNNNN		 PBM
Barrera et al.(2016)
PHOX2B_Q143R 		0.623 0.368
Noto
M02101_2.00 		Mus musculus
NNHHATDDNN
NNHHATDDNN		 PBM
Weirauch et al.(2014)
pTH6268 		0.615 0.368
VSX1
M00269_2.00 		Homo sapiens
NNWAAYNNN
NNNRTTWNN		 PBM
Barrera et al.(2016)
VSX1_REF 		0.608 0.386
Vsx1
M00459_2.00 		Mus musculus
NNTAATDDN
NHHATTANN		 PBM
Berger et al.(2008)
Vsx1_1728 		0.608 0.386
Vsx1
M03267_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Vsx1_1 		0.608 0.386
VSX1
M00266_2.00 		Homo sapiens
NNTAAYNNN
NNNRTTANN		 PBM
Barrera et al.(2016)
VSX1_G160D 		0.608 0.386
Sebox
M02097_2.00 		Mus musculus
NHTTAATTAN
NTAATTAADN		 PBM
Weirauch et al.(2014)
pTH6379 		0.605 0.421
ceh-5
M02179_2.00 		Caenorhabditis elegans
NNTAATDDN
NHHATTANN		 PBM
Weirauch et al.(2014)
pTH6562 		0.604 0.368
SHOX
M02095_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 PBM
Weirauch et al.(2014)
pTH5805 		0.601 0.404
Shox2
M00439_2.00 		Mus musculus
NTAATDDN
NHHATTAN		 PBM
Berger et al.(2008)
Shox2_2641 		0.601 0.404
SHOX
M03232_2.00 		Homo sapiens
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
SHOX_1 		0.601 0.404
SHOX2
M03204_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Jolma et al.(2013)
SHOX2_1 		0.601 0.404
Shox2
M03263_2.00 		Mus musculus
NTAATTRN
NYAATTAN		 SELEX
Jolma et al.(2013)
Shox2_1 		0.601 0.404
CG5369
M03876_2.00 		Drosophila melanogaster
TAATTHVATTA
TAATBDAATTA		 SELEX
Nitta et al.(2015)
CG5369_1 		0.601 0.404
CG5369
M03877_2.00 		Drosophila melanogaster
TAATTRNNTAATBN
NVATTANNYAATTA		 SELEX
Nitta et al.(2015)
CG5369_2 		0.601 0.404
CG5369
M03878_2.00 		Drosophila melanogaster
TAATTVRATWA
TWATYBAATTA		 SELEX
Nitta et al.(2015)
CG5369_3 		0.601 0.404
SHOX
M05366_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX 		0.601 0.404
Shox2
M10772_2.00 		Rattus norvegicus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SHOX2_05 		0.601 0.404
SHOX
M05367_2.00 		Homo sapiens
NTAATTRV
BYAATTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1 		0.601 0.404
SHOX
M05368_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2 		0.601 0.404
C4B866_NEMVE
M02052_2.00 		Nematostella vectensis
NNTTAATTARNN
NNYTAATTAANN		 PBM
Weirauch et al.(2014)
pTH6176 		0.600 0.421
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPMAP00000002178 Homeodomain 118 174

Links

Other Homeodomain family TFs
Other Petromyzon marinus TFs

604 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGABI2DRAFT_183343 Agaricus bisporus AGABI2DRAFT_183343 N
M378DRAFT_156828 Amanita muscaria M378DRAFT_156828 N
L804_01011 Cryptococcus gattii L804_01011 N
GALMADRAFT_134896 Galerina marginata GALMADRAFT_134896 N
GYMLUDRAFT_83637 Gymnopus luxurians GYMLUDRAFT_83637 N
M413DRAFT_438457 Hebeloma cylindrosporum M413DRAFT_438457 N
fgenesh2_pg.C_scaffold_2000358 Heterobasidion annosum fgenesh2_pg.C_scaffold_2000358 N
HETIRDRAFT_115131 Heterobasidion irregulare HETIRDRAFT_115131 N
HYDPIDRAFT_98320 Hydnomerulius pinastri HYDPIDRAFT_98320 N
K443DRAFT_89219 Laccaria amethystina K443DRAFT_89219 N
LACBIDRAFT_293478 Laccaria bicolor LACBIDRAFT_293478 N
MPER_06925 Moniliophthora perniciosa MPER_06925 N
Moror_9094 Moniliophthora roreri Moror_9094 N
PAXRUDRAFT_821444 Paxillus rubicundulus PAXRUDRAFT_821444 N
PHACADRAFT_209047 Phanerochaete carnosa PHACADRAFT_209047 N
M404DRAFT_992679 Pisolithus tinctorius M404DRAFT_992679 N
M404DRAFT_1008279 Pisolithus tinctorius M404DRAFT_1008279 N
PLEOSDRAFT_1073965 Pleurotus ostreatus PLEOSDRAFT_1073965 N
SCHCODRAFT_105299 Schizophyllum commune SCHCODRAFT_105299 N
SCLCIDRAFT_1219298 Scleroderma citrinum SCLCIDRAFT_1219298 N
SERLA73DRAFT_162028 Serpula lacrymans SERLA73DRAFT_162028 N
M422DRAFT_30390 Sphaerobolus stellatus M422DRAFT_30390 N
CY34DRAFT_801159 Suillus luteus CY34DRAFT_801159 N
BN946_scf184798.g98 Trametes cinnabarina BN946_scf184798.g98 N
A1Q1_08057 Trichosporon asahii A1Q1_08057 N