LMX1B (Pteropus vampyrus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPVAG00000004265 T215208_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.695 0.267
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.695 0.267
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.695 0.267
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.685 0.311
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.685 0.311
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.685 0.311
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.685 0.311
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.685 0.311
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.685 0.311
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.685 0.311
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.685 0.311
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.685 0.311
Lmx1a
M00432_2.00 		Mus musculus
NNDATKRN
NYMATHNN		 PBM
Berger et al.(2008)
Lmx1a_2238 		0.360 1.000
Lmx1b
M00482_2.00 		Mus musculus
NDADDRN
NYHHTHN		 PBM
Berger et al.(2008)
Lmx1b_3433 		0.360 1.000
LMX1A
M03179_2.00 		Homo sapiens
NTAATTAV
BTAATTAN		 SELEX
Jolma et al.(2013)
LMX1A_1 		0.360 1.000
LMX1B
M03153_2.00 		Homo sapiens
NTWATTRN
NYAATWAN		 SELEX
Jolma et al.(2013)
LMX1B_1 		0.360 1.000
LMX1B
M03154_2.00 		Homo sapiens
DTAATTRV
BYAATTAH		 SELEX
Jolma et al.(2013)
LMX1B_2 		0.360 1.000
LMX1A
M05215_2.00 		Homo sapiens
YTAATTAV
BTAATTAR		 SELEX
Yin et al.(2017)
LMX1A_eDBD_HT-SELEX 		0.360 1.000
LMX1B
M05153_2.00 		Homo sapiens
NNNBTAATTAN
NTAATTAVNNN		 SELEX
Yin et al.(2017)
LMX1B_eDBD_HT-SELEX 		0.360 1.000
LMX1B
M05156_2.00 		Homo sapiens
NDDTTAATTAH
DTAATTAAHHN		 SELEX
Yin et al.(2017)
LMX1B_FL_HT-SELEX 		0.360 1.000
LMX1A
M05216_2.00 		Homo sapiens
DTAAYGHN
NDCRTTAH		 SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_1 		0.360 1.000
LMX1A
M05217_2.00 		Homo sapiens
YTAATTRN
NYAATTAR		 SELEX
Yin et al.(2017)
LMX1A_eDBD_Methyl-HT-SELEX_2 		0.360 1.000
LMX1B
M05154_2.00 		Homo sapiens
NNNBYAATTRN
NYAATTRVNNN		 SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_1 		0.360 1.000
LMX1B
M05155_2.00 		Homo sapiens
WTAAYGAR
YTCRTTAW		 SELEX
Yin et al.(2017)
LMX1B_eDBD_Methyl-HT-SELEX_2 		0.360 1.000
LMX1B
M05157_2.00 		Homo sapiens
TTAACGAG
CTCGTTAA		 SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_1 		0.360 1.000
LMX1B
M05158_2.00 		Homo sapiens
NWWTTAATTAW
WTAATTAAWWN		 SELEX
Yin et al.(2017)
LMX1B_FL_Methyl-HT-SELEX_2 		0.360 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPVAP00000004038 Homeodomain 220 265

Links

Other Homeodomain family TFs
Other Pteropus vampyrus TFs

1321 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL005974 Aedes aegypti AAEL005974 I 0.000
ENSAPLG00000006374 Anas platyrhynchos ENSAPLG00000006374 N 0.000
ENSACAG00000002042 Anolis carolinensis ENSACAG00000002042 N 0.000
AALB004801 Anopheles albimanus AALB004801 N 0.000
AARA005693 Anopheles arabiensis AARA005693 N 0.000
AATE018929 Anopheles atroparvus AATE018929 I 0.000
ACOM031223 Anopheles coluzzii ACOM031223 I 0.000
ACUA018681 Anopheles culicifacies ACUA018681 N 0.000
ADIR007401 Anopheles dirus ADIR007401 N 0.000
AEPI004567 Anopheles epiroticus AEPI004567 N 0.000
AFAF010529 Anopheles farauti AFAF010529 N 0.000
AFAF016470 Anopheles farauti AFAF016470 N 0.000
AFUN006142 Anopheles funestus AFUN006142 N 0.000
AGAP005727 Anopheles gambiae AGAP005727 I 0.000
AMEC014801 Anopheles melas AMEC014801 N 0.000
AMEM006151 Anopheles merus AMEM006151 I 0.000
AMIN011034 Anopheles minimus AMIN011034 N 0.000
AQUA011153 Anopheles quadriannulatus AQUA011153 N 0.000
ASTEI06400 Anopheles stephensi ASTEI06400 N 0.000
ACEP16435 Atta cephalotes ACEP16435 N 0.000
BGLB001079 Biomphalaria glabrata BGLB001079 N 0.000
BGIBMGA011355 Bombyx mori BGIBMGA011355 N 0.000
e_gw.5.534.1 Branchiostoma floridae e_gw.5.534.1 I 0.000
e_gw.5.535.1 Branchiostoma floridae e_gw.5.535.1 I 0.000
Aan_R009659 Calypte anna Aan_R009659 N 0.000
DBX1 Canis familiaris ENSCAFG00000009813 N 0.000
CLEC012266 Cimex lectularius CLEC012266 N 0.000
csin111071 Clonorchis sinensis csin111071 N 0.000
CpipJ_CPIJ016099 Culex pipiens CpipJ_CPIJ016099 N 0.000
CPIJ016099 Culex quinquefasciatus CPIJ016099 N 0.000
ENSDORG00000013256 Dipodomys ordii ENSDORG00000013256 I 0.000
HLX Echinops telfairi ENSETEG00000003298 I 0.000
ENSEEUG00000014300 Erinaceus europaeus ENSEEUG00000014300 N 0.000
D915_01034 Fasciola hepatica D915_01034 N 0.000
ENSFALG00000012045 Ficedula albicollis ENSFALG00000012045 N 0.000
ENSGMOG00000002488 Gadus morhua ENSGMOG00000002488 N 0.000
ENSGALG00000027554 Gallus gallus ENSGALG00000027554 N 0.000
Gfo_R010904 Geospiza fortis Gfo_R010904 N 0.000
TTAC_0001113501 Hydatigera taeniaeformis TTAC_0001113501 N 0.000
HmN_000793400 Hymenolepis microstoma HmN_000793400 I 0.716
LDEC001875 Leptinotarsa decemlineata LDEC001875 N 0.000
LotgiG155764 Lottia gigantea LotgiG155764 N 0.000
LCUP015731 Lucilia cuprina LCUP015731 N 0.000
ENSMEUG00000003167 Macropus eugenii ENSMEUG00000003167 I 0.000
MCINX013655 Melitaea cinxia MCINX013655 N 0.000
ENSOPRG00000015148 Ochotona princeps ENSOPRG00000015148 N 0.000
Ocbimv22038272m.g Octopus bimaculoides Ocbimv22038272m.g N 0.000
T265_04102 Opisthorchis viverrini T265_04102 N 0.000
PPAI003680 Phlebotomus papatasi PPAI003680 N 0.000
RPRC011993 Rhodnius prolixus RPRC011993 N 0.000
SSLN_0001900001 Schistocephalus solidus SSLN_0001900001 N 0.000
SCUD_0000356901 Schistosoma curassoni SCUD_0000356901 N 0.000
SBAD_0000059701 Soboliphyme baturini SBAD_0000059701 N 0.000
SINV13310 Solenopsis invicta SINV13310 N 0.000
HLX Sorex araneus ENSSARG00000009476 I 0.000
SPER_0000200201 Spirometra erinaceieuropaei SPER_0000200201 N 0.000
L892_g2163 Steinernema scapterisci L892_g2163 N 0.000
ENSTGUG00000002708 Taeniopygia guttata ENSTGUG00000002708 N 0.000
nkx3.2 Takifugu rubripes ENSTRUG00000014438 I 0.000
MICALL2 Takifugu rubripes ENSTRUG00000013527 I 0.000
ENSTNIG00000018605 Tetraodon nigroviridis ENSTNIG00000018605 I 0.000
TRE_0001634301 Trichobilharzia regenti TRE_0001634301 N 0.000
TRE_0001854501 Trichobilharzia regenti TRE_0001854501 N 0.000
ENSTBEG00000005783 Tupaia belangeri ENSTBEG00000005783 N 0.000
L798_10069 Zootermopsis nevadensis L798_10069 N 0.000