CDX4 (Taeniopygia guttata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTGUG00000005699 T216263_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cdx4
M09197_2.00 		Mus musculus
WGATTTATDRBH
DVYHATAAATCW		 Misc
Kulakovskiy et al.(2013)
CDX4_MOUSE.H11MO.0.A 		0.867 0.982
CDX4
M05129_2.00 		Homo sapiens
VKTTTATKRCH
DGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_HT-SELEX 		0.867 0.965
CDX4
M05130_2.00 		Homo sapiens
BGTCGTAAAHN
NDTTTACGACV		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_1 		0.867 0.965
CDX4
M05131_2.00 		Homo sapiens
VKTTTATKGCN
NGCMATAAAMB		 SELEX
Yin et al.(2017)
CDX4_FL_Methyl-HT-SELEX_2 		0.867 0.965
Cdx1
M00427_2.00 		Mus musculus
NWWATDRNN
NNYHATWWN		 PBM
Berger et al.(2008)
Cdx1_2245 		0.831 0.930
CDX1
M03115_2.00 		Homo sapiens
NTTTATKRB
VYMATAAAN		 SELEX
Jolma et al.(2013)
CDX1_1 		0.831 0.930
CDX1
M05018_2.00 		Homo sapiens
VKTTTATKRCN
NGYMATAAAMB		 SELEX
Yin et al.(2017)
CDX1_eDBD_HT-SELEX 		0.831 0.930
CDX1
M09140_2.00 		Homo sapiens
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_HUMAN.H11MO.0.C 		0.831 0.930
Cdx1
M09186_2.00 		Mus musculus
HCWTAAAD
HTTTAWGD		 Misc
Kulakovskiy et al.(2013)
CDX1_MOUSE.H11MO.0.C 		0.831 0.930
CDX1
M10670_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q4 		0.831 0.930
CDX1
M10671_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX1_Q5 		0.831 0.930
CDX1
M05019_2.00 		Homo sapiens
NGTCGTAAAWB
VWTTTACGACN		 SELEX
Yin et al.(2017)
CDX1_eDBD_Methyl-HT-SELEX 		0.831 0.930
Cdx2
M00447_2.00 		Mus musculus
NWWAYDRNN
NNYHRTWWN		 PBM
Berger et al.(2008)
Cdx2_4272 		0.819 0.930
Cdx2
M09193_2.00 		Mus musculus
BTTTATKRCYBY
RVRGYMATAAAV		 Misc
Kulakovskiy et al.(2013)
CDX2_MOUSE.H11MO.0.A 		0.819 0.930
Cdx2
M09572_2.00 		Mus musculus
NTTTTATKRC
GYMATAAAAN		 Misc
Heinz et al.(2010)
mES-Cdx2_GSE14586 		0.819 0.930
CDX2
M03196_2.00 		Homo sapiens
KTTTATKRB
VYMATAAAM		 SELEX
Jolma et al.(2013)
CDX2_1 		0.819 0.912
CDX2
M05248_2.00 		Homo sapiens
NDTWAYRRYN
NRYYRTWAHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_1 		0.819 0.912
CDX2
M05249_2.00 		Homo sapiens
NDWWATKRB
VYMATWWHN		 SELEX
Yin et al.(2017)
CDX2_eDBD_HT-SELEX_2 		0.819 0.912
CDX2
M08131_2.00 		Homo sapiens
YTTTATKRCHB
VDGYMATAAAR		 ChIP-seq
Mathelier et al.(2014)
MA0465.1 		0.819 0.912
CDX2
M09152_2.00 		Homo sapiens
DTTBATKGCHNB
VNDGCMATVAAH		 Misc
Kulakovskiy et al.(2013)
CDX2_HUMAN.H11MO.0.A 		0.819 0.912
CDX2
M10723_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_01 		0.819 0.912
CDX2
M10724_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5_02 		0.819 0.912
CDX2
M10725_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q5 		0.819 0.912
CDX2
M10726_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDX2_Q6 		0.819 0.912
CDX2
M05250_2.00 		Homo sapiens
NRTCGTAWHBNN
NNVDWTACGAYN		 SELEX
Yin et al.(2017)
CDX2_eDBD_Methyl-HT-SELEX 		0.819 0.912
CDX1
M10761_2.00 		Gallus gallus
BDBWAAK
MTTWVHV		 Transfac
Matys et al.(2006)
V$CDXA_01 		0.819 0.895
CDX1
M10762_2.00 		Gallus gallus
WWWWMYR
YRKWAWW		 Transfac
Matys et al.(2006)
V$CDXA_02 		0.819 0.895
cad
M03780_2.00 		Drosophila melanogaster
NKTTTATKRCHB
VDGYMATAAAMN		 SELEX
Nitta et al.(2015)
cad_1 		0.808 0.842
cad
M03781_2.00 		Drosophila melanogaster
NDTTTATKRCHN
NDGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_2 		0.808 0.842
cad
M03782_2.00 		Drosophila melanogaster
NDTTTATKRCNB
VNGYMATAAAHN		 SELEX
Nitta et al.(2015)
cad_3 		0.808 0.842
cad
M03783_2.00 		Drosophila melanogaster
NNTTTAYGRYNN
NNRYCRTAAANN		 SELEX
Nitta et al.(2015)
cad_4 		0.808 0.842
cad
M06223_2.00 		Drosophila melanogaster
HTTWATTR
YAATWAAD		 B1H
Zhu et al.(2011)
Cad_Cell_FBgn0000251 		0.808 0.842
cad
M06224_2.00 		Drosophila melanogaster
RBYVDAAMV
BKTTHBRVY		 B1H
Zhu et al.(2011)
cad_FlyReg_FBgn0000251 		0.808 0.842
cad
M06225_2.00 		Drosophila melanogaster
NTTWATKR
YMATWAAN		 B1H
Zhu et al.(2011)
Cad_SOLEXA_FBgn0000251 		0.808 0.842
cad
M08420_2.00 		Drosophila melanogaster
DTTTTATKRYY
RRYMATAAAAH		 ChIP-chip
Mathelier et al.(2014)
MA0216.2 		0.808 0.842
cad
M09580_2.00 		Drosophila melanogaster
DTTTAYGRYN
NRYCRTAAAH		 Misc
Heinz et al.(2010)
Drosophila-Embryos_modEncode 		0.808 0.842
cad
M09674_2.00 		Drosophila melanogaster
HTTTATKRBY
RVYMATAAAD		 Misc
Kulakovskiy et al.(2009)
cad 		0.808 0.842
cad
M10783_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$CAD_Q6 		0.808 0.842
Q70LF3_ARTSF
M02211_2.00 		Artemia franciscana
BTAATTAB
VTAATTAV		 PBM
Weirauch et al.(2014)
pTH5553 		0.798 0.895
pal-1
M02183_2.00 		Caenorhabditis elegans
GYAATWAA
TTWATTRC		 PBM
Weirauch et al.(2014)
pTH6016 		0.618 0.667
Q9GP48_9TURB
M02217_2.00 		Discocelis tigrina
DTAATTAB
VTAATTAH		 PBM
Weirauch et al.(2014)
pTH6515 		0.609 0.702
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.609 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000005859 Homeodomain 139 195

Links

Other Homeodomain family TFs
Other Taeniopygia guttata TFs

316 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000007247 Ailuropoda melanoleuca ENSAMEG00000007247 I
ENSAMEG00000017950 Ailuropoda melanoleuca ENSAMEG00000017950 I
Alligator_sinensis_CCG013028.1 Alligator sinensis Alligator_sinensis_CCG013028.1 I
Alligator_sinensis_CCG013028.2 Alligator sinensis Alligator_sinensis_CCG013028.2 I
Alligator_sinensis_CCG013467.1 Alligator sinensis Alligator_sinensis_CCG013467.1 I
ENSAPLG00000009091 Anas platyrhynchos ENSAPLG00000009091 I
ENSAPLG00000014506 Anas platyrhynchos ENSAPLG00000014506 I
E2F7 Anolis carolinensis ENSACAG00000005414 I
E2F8 Anolis carolinensis ENSACAG00000015743 I
Afo_R006642 Aptenodytes forsteri Afo_R006642 I
Afo_R014077 Aptenodytes forsteri Afo_R014077 I
ENSAMXG00000016864 Astyanax mexicanus ENSAMXG00000016864 I
ENSBTAP00000022518-D1 Bos grunniens ENSBTAP00000022518-D1 I
ENSBTAP00000023190-D1 Bos grunniens ENSBTAP00000023190-D1 I
E2F7 Bos taurus ENSBTAG00000016931 I
E2F8 Bos taurus ENSBTAG00000017446 I
fgenesh2_pg.scaffold_288000044 Branchiostoma floridae fgenesh2_pg.scaffold_288000044 I
Brh_R005316 Buceros rhinoceros Brh_R005316 I
Brh_R011115 Buceros rhinoceros Brh_R011115 I
E2F8 Callithrix jacchus ENSCJAG00000006811 I
E2F7 Callithrix jacchus ENSCJAG00000019162 I
Aan_R005623 Calypte anna Aan_R005623 I
Aan_R006648 Calypte anna Aan_R006648 I
E2F7 Canis familiaris ENSCAFG00000005718 I
E2F8 Canis familiaris ENSCAFG00000009431 I
E2F7 Cavia porcellus ENSCPOG00000007375 I
E2F8 Cavia porcellus ENSCPOG00000013766 I
Cmyd_10011734 Chelonia mydas Cmyd_10011734 I
Cmyd_10016427 Chelonia mydas Cmyd_10016427 I
ENSCSAG00000003998 Chlorocebus sabaeus ENSCSAG00000003998 I
ENSCSAG00000005093 Chlorocebus sabaeus ENSCSAG00000005093 I
E2F8 Choloepus hoffmanni ENSCHOG00000006322 I
ENSCING00000014484 Ciona intestinalis ENSCING00000014484 I
CGI_10023548 Crassostrea gigas CGI_10023548 I
e2f7 Danio rerio ENSDARG00000008986 I
e2f8 Danio rerio ENSDARG00000057323 I
E2F7 Dasypus novemcinctus ENSDNOG00000001580 I
E2F8 Dasypus novemcinctus ENSDNOG00000003349 I
E2f8 Dipodomys ordii ENSDORG00000000040 I
ENSDORG00000003404 Dipodomys ordii ENSDORG00000003404 I
E2F7 Echinops telfairi ENSETEG00000014750 I
E2F8 Equus caballus ENSECAG00000016457 I
ENSECAG00000017963 Equus caballus ENSECAG00000017963 I
E2F7 Erinaceus europaeus ENSEEUG00000000248 I
E2F8 Erinaceus europaeus ENSEEUG00000011472 I
E2F8 Felis catus ENSFCAG00000010706 I
E2F7 Felis catus ENSFCAG00000010756 I
ENSFALG00000001625 Ficedula albicollis ENSFALG00000001625 I
ENSFALG00000010433 Ficedula albicollis ENSFALG00000010433 I
ENSGMOG00000019253 Gadus morhua ENSGMOG00000019253 I
ENSGALG00000004023 Gallus gallus ENSGALG00000004023 I
ENSGALG00000010265 Gallus gallus ENSGALG00000010265 I
e2f8 Gasterosteus aculeatus ENSGACG00000017086 I
e2f7 Gasterosteus aculeatus ENSGACG00000019468 I
Gfo_R003950 Geospiza fortis Gfo_R003950 I
Gfo_R003976 Geospiza fortis Gfo_R003976 I
E2F7 Gorilla gorilla ENSGGOG00000012645 I
E2F8 Homo sapiens ENSG00000129173 D
E2F7 Homo sapiens ENSG00000165891 D
ENSSTOG00000007887 Ictidomys tridecemlineatus ENSSTOG00000007887 I
ENSSTOG00000008838 Ictidomys tridecemlineatus ENSSTOG00000008838 I
ISCW021939 Ixodes scapularis ISCW021939 I
ENSLACG00000014031 Latimeria chalumnae ENSLACG00000014031 I
ENSLACG00000016113 Latimeria chalumnae ENSLACG00000016113 I
ENSLOCG00000004831 Lepisosteus oculatus ENSLOCG00000004831 I
ENSLOCG00000016279 Lepisosteus oculatus ENSLOCG00000016279 I
LotgiG168338 Lottia gigantea LotgiG168338 I
E2F7 Loxodonta africana ENSLAFG00000017902 I
E2F8 Loxodonta africana ENSLAFG00000022713 I
ENSP00000323246 Macaca fascicularis ENSP00000323246 I
ENSP00000379463 Macaca fascicularis ENSP00000379463 I
E2F8 Macaca mulatta ENSMMUG00000010853 I
E2F7 Macaca mulatta ENSMMUG00000022846 I
ENSMEUG00000008461 Macropus eugenii ENSMEUG00000008461 I
E2F8 Meleagris gallopavo ENSMGAG00000002303 I
E2F7 Meleagris gallopavo ENSMGAG00000010943 I
E2F7 Microcebus murinus ENSMICG00000013872 I
E2F8 Microcebus murinus ENSMICG00000017089 I
EuGene.0800010516 Micromonas sp RCC299 EuGene.0800010516 I
E2F8 Monodelphis domestica ENSMODG00000009029 I
E2F7 Monodelphis domestica ENSMODG00000020465 I
ENSMPUG00000013899 Mustela putorius furo ENSMPUG00000013899 I
ENSMPUG00000017468 Mustela putorius furo ENSMPUG00000017468 I
E2f7 Mus musculus ENSMUSG00000020185 D
E2f8 Mus musculus ENSMUSG00000046179 I
Myotis_brandtii_E2F7_10034114 Myotis brandtii Myotis_brandtii_E2F7_10034114 I
Myotis_brandtii_E2F8_10018668 Myotis brandtii Myotis_brandtii_E2F8_10018668 I
E2F7 Myotis lucifugus ENSMLUG00000012116 I
E2F8 Myotis lucifugus ENSMLUG00000015592 I
NV16280 Nasonia vitripennis NV16280 I
ENSNLEG00000004897 Nomascus leucogenys ENSNLEG00000004897 I
ENSNLEG00000017803 Nomascus leucogenys ENSNLEG00000017803 I
E2F7 Ochotona princeps ENSOPRG00000001896 I
Ocbimv22037571m.g Octopus bimaculoides Ocbimv22037571m.g I
Ogr19156 Ophisaurus gracilis Ogr19156 I
ENSONIG00000007135 Oreochromis niloticus ENSONIG00000007135 I
ENSONIG00000012070 Oreochromis niloticus ENSONIG00000012070 I
E2F8 Ornithorhynchus anatinus ENSOANG00000011290 I
E2F8 Oryctolagus cuniculus ENSOCUG00000004485 I
E2F7 Oryctolagus cuniculus ENSOCUG00000004932 I
e2f8 Oryzias latipes ENSORLG00000000786 I
ENSORLG00000012301 Oryzias latipes ENSORLG00000012301 I
OSTLU_42726 Ostreococcus lucimarinus OSTLU_42726 I
gw1.8.144.1 Ostreococcus RCC809 gw1.8.144.1 I
0800010288 Ostreococcus tauri 0800010288 I
E2F8 Otolemur garnettii ENSOGAG00000005774 I
E2F7 Otolemur garnettii ENSOGAG00000010821 I
ENSOARG00000008807 Ovis aries ENSOARG00000008807 I
ENSOARG00000014941 Ovis aries ENSOARG00000014941 I
E2F8 Pan troglodytes ENSPTRG00000003435 I
E2F7 Pan troglodytes ENSPTRG00000005245 I
ENSPANG00000004929 Papio anubis ENSPANG00000004929 I
ENSPANG00000005225 Papio anubis ENSPANG00000005225 I
ENSPSIG00000008707 Pelodiscus sinensis ENSPSIG00000008707 I
ENSPSIG00000012629 Pelodiscus sinensis ENSPSIG00000012629 I
ENSPMAG00000001858 Petromyzon marinus ENSPMAG00000001858 I
fgenesh1_pg.scaffold_121000063 Physcomitrella patens fgenesh1_pg.scaffold_121000063 I
fgenesh1_pg.scaffold_172000049 Physcomitrella patens fgenesh1_pg.scaffold_172000049 I
ENSPFOG00000003272 Poecilia formosa ENSPFOG00000003272 I
ENSPFOG00000005584 Poecilia formosa ENSPFOG00000005584 I
Pvit_06409 Pogona vitticeps Pvit_06409 I
Pvit_10252 Pogona vitticeps Pvit_10252 I
ENSPPYG00000003424 Pongo abelii ENSPPYG00000003424 I
ENSPPYG00000004791 Pongo abelii ENSPPYG00000004791 I
E2F7 Procavia capensis ENSPCAG00000000596 I
E2F8 Procavia capensis ENSPCAG00000003996 I
E2F7 Pteropus vampyrus ENSPVAG00000000288 I
E2F8 Pteropus vampyrus ENSPVAG00000012522 I
E2f8 Rattus norvegicus ENSRNOG00000022537 I
E2f7 Rattus norvegicus ENSRNOG00000026252 I
Sakowv30003251m.g Saccoglossus kowalevskii Sakowv30003251m.g I
ENSSHAG00000002919 Sarcophilus harrisii ENSSHAG00000002919 I
ENSSHAG00000018372 Sarcophilus harrisii ENSSHAG00000018372 I
SELMODRAFT_421405 Selaginella moellendorffii SELMODRAFT_421405 I
SELMODRAFT_451530 Selaginella moellendorffii SELMODRAFT_451530 I
E2F7 Sorex araneus ENSSARG00000004122 I
SPU_023346 Strongylocentrotus purpuratus SPU_023346 I
E2F7 Sus scrofa ENSSSCG00000000950 I
E2F8 Sus scrofa ENSSSCG00000013352 I
E2F7 Taeniopygia guttata ENSTGUG00000007515 I
E2F8 Taeniopygia guttata ENSTGUG00000015857 I
e2f7 Takifugu rubripes ENSTRUG00000001843 I
e2f8 Takifugu rubripes ENSTRUG00000015792 I
ENSTSYG00000007279 Tarsius syrichta ENSTSYG00000007279 I
ENSTSYG00000008243 Tarsius syrichta ENSTSYG00000008243 I
e2f8 Tetraodon nigroviridis ENSTNIG00000009615 I
E2F7 Tupaia belangeri ENSTBEG00000005417 I
E2F8 Tupaia belangeri ENSTBEG00000005521 I
E2F7 Tursiops truncatus ENSTTRG00000000110 I
E2F8 Tursiops truncatus ENSTTRG00000005707 I
Tal_R000495 Tyto alba Tal_R000495 I
Tal_R008430 Tyto alba Tal_R008430 I
E2F7 Vicugna pacos ENSVPAG00000011151 I
E2F8 Vicugna pacos ENSVPAG00000012423 I
e2f7.L Xenopus laevis XB-GENE-1018449 I
e2f8.L Xenopus laevis XB-GENE-1219153 I
e2f7 Xenopus tropicalis XB-GENE-1018445 I
XP_002942881 Xenopus tropicalis XP_002942881 I
ENSXMAG00000006252 Xiphophorus maculatus ENSXMAG00000006252 I
ENSXMAG00000010237 Xiphophorus maculatus ENSXMAG00000010237 I