CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSTGUG00000016958 *(Taeniopygia guttata)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	ENSTGUG00000016958	T216350_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
Hoxc13 M00389_2.00	Mus musculus	NTTWAYDRNN	NNYHRTWAAN	PBM Berger et al.(2008) Hoxc13_3127	0.840	0.895
HOXC13 M03129_2.00	Homo sapiens	NTTTTATTRS	SYAATAAAAN	SELEX Jolma et al.(2013) HOXC13_1	0.840	0.895
HOXC13 M03130_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXC13_2	0.840	0.895
HOXC13 M05072_2.00	Homo sapiens	RKTTTATKGSN	NSCMATAAAMY	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_1	0.840	0.895
HOXC13 M05073_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_HT-SELEX_2	0.840	0.895
HOXC13 M10680_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXC13_Q2	0.840	0.895
HOXC13 M05074_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Yin et al.(2017) HOXC13_eDBD_Methyl-HT-SELEX	0.840	0.895
Hoxa13 M00473_2.00	Mus musculus	NTTWAYDRN	NYHRTWAAN	PBM Berger et al.(2008) Hoxa13_3126	0.836	0.860
HOXA13 M03098_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_1	0.836	0.860
HOXA13 M03099_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_2	0.836	0.860
HOXA13 M03100_2.00	Homo sapiens	DKTTTATKRS	SYMATAAAMH	SELEX Jolma et al.(2013) HOXA13_3	0.836	0.860
HOXA13 M03101_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Jolma et al.(2013) HOXA13_4	0.836	0.860
HOXA13 M04977_2.00	Homo sapiens	DTTTTATKGGB	VCCMATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_1	0.836	0.860
HOXA13 M04978_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_HT-SELEX_2	0.836	0.860
HOXA13 M04981_2.00	Homo sapiens	DTTTTATKRSN	NSYMATAAAAH	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_1	0.836	0.860
HOXA13 M04982_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_HT-SELEX_2	0.836	0.860
HOXA13 M09134_2.00	Homo sapiens	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_HUMAN.H11MO.0.C	0.836	0.860
Hoxa13 M09202_2.00	Mus musculus	VDTWTWATKGS	SCMATWAWAHB	Misc Kulakovskiy et al.(2013) HXA13_MOUSE.H11MO.0.C	0.836	0.860
HOXA13 M10653_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_01	0.836	0.860
HOXA13 M10654_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXA13_02	0.836	0.860
HOXA13 M04979_2.00	Homo sapiens	DTTTTATTRSN	NSYAATAAAAH	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_1	0.836	0.860
HOXA13 M04980_2.00	Homo sapiens	NCTCGTAAAHN	NDTTTACGAGN	SELEX Yin et al.(2017) HOXA13_eDBD_Methyl-HT-SELEX_2	0.836	0.860
HOXA13 M04983_2.00	Homo sapiens	DKTTTATTGBN	NVCAATAAAMH	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_1	0.836	0.860
HOXA13 M04984_2.00	Homo sapiens	NCTCGTAAAWH	DWTTTACGAGN	SELEX Yin et al.(2017) HOXA13_FL_Methyl-HT-SELEX_2	0.836	0.860
HOXD13 M00299_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_REF	0.831	0.825
Hoxd13 M00394_2.00	Mus musculus	NWTHRYDDN	NHHRYDAWN	PBM Berger et al.(2008) Hoxd13_2356	0.831	0.825
HOXD13 M03141_2.00	Homo sapiens	DTTTTATKRS	SYMATAAAAH	SELEX Jolma et al.(2013) HOXD13_1	0.831	0.825
HOXD13 M03142_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXD13_2	0.831	0.825
Hoxd13 M03247_2.00	Mus musculus	DKTTTATTRS	SYAATAAAMH	SELEX Jolma et al.(2013) Hoxd13_1	0.831	0.825
Hoxd13 M03248_2.00	Mus musculus	DDTTTAYKAGN	NCTMRTAAAHH	SELEX Jolma et al.(2013) Hoxd13_2	0.831	0.825
HOXD13 M05122_2.00	Homo sapiens	GKTTTATKGSS	SSCMATAAAMC	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_1	0.831	0.825
HOXD13 M05123_2.00	Homo sapiens	BCTCGTAAAMH	DKTTTACGAGV	SELEX Yin et al.(2017) HOXD13_eDBD_HT-SELEX_2	0.831	0.825
HOXD13 M10689_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HOXD13_Q6	0.831	0.825
HOXD13 M00295_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_N298S	0.831	0.825
HOXD13 M05124_2.00	Homo sapiens	DDTTTATTRBB	VVYAATAAAHH	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_1	0.831	0.825
HOXD13 M05125_2.00	Homo sapiens	VCTCGTAAAAH	DTTTTACGAGB	SELEX Yin et al.(2017) HOXD13_eDBD_Methyl-HT-SELEX_2	0.831	0.825
HOXD13 M00300_2.00	Homo sapiens	WTTTATDR	YHATAAAW	PBM Barrera et al.(2016) HOXD13_S316C	0.831	0.807
HOXD13 M00293_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Barrera et al.(2016) HOXD13_I297V	0.831	0.807
HOXD13 M00298_2.00	Homo sapiens	NTTWAYDDN	NHHRTWAAN	PBM Barrera et al.(2016) HOXD13_R306W	0.824	0.807
hoxd13a M02081_2.00	Danio rerio	WTTTATDR	YHATAAAW	PBM Weirauch et al.(2014) pTH6143	0.817	0.789
HOXD13 M00294_2.00	Homo sapiens	THGTWAAW	WTTWACDA	PBM Barrera et al.(2016) HOXD13_I322L	0.814	0.807
HOXB13 M02092_2.00	Homo sapiens	NTTWAYDDNN	NNHHRTWAAN	PBM Weirauch et al.(2014) pTH5808	0.714	0.825
Hoxb13 M00505_2.00	Mus musculus	NTTWAYDDNN	NNHHRTWAAN	PBM Berger et al.(2008) Hoxb13_3479	0.714	0.825
HOXB13 M03175_2.00	Homo sapiens	DTTTTATKGG	CCMATAAAAH	SELEX Jolma et al.(2013) HOXB13_1	0.714	0.825
HOXB13 M03176_2.00	Homo sapiens	BCTCGTAAAAH	DTTTTACGAGV	SELEX Jolma et al.(2013) HOXB13_2	0.714	0.825
HOXB13 M05201_2.00	Homo sapiens	DTTTTATKGGN	NCCMATAAAAH	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_1	0.714	0.825
HOXB13 M05202_2.00	Homo sapiens	NCTCGTAAAHH	DDTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_HT-SELEX_2	0.714	0.825
HOXB13 M09149_2.00	Homo sapiens	TTTTATDRSN	NSYHATAAAA	Misc Kulakovskiy et al.(2013) HXB13_HUMAN.H11MO.0.A	0.714	0.825
HOXB13 M05203_2.00	Homo sapiens	NCTCGTAAAAH	DTTTTACGAGN	SELEX Yin et al.(2017) HOXB13_eDBD_Methyl-HT-SELEX	0.714	0.825
CDX1 M10761_2.00	Gallus gallus	BDBWAAK	MTTWVHV	Transfac Matys et al.(2006) V$CDXA_01	0.611	0.561
CDX1 M10762_2.00	Gallus gallus	WWWWMYR	YRKWAWW	Transfac Matys et al.(2006) V$CDXA_02	0.611	0.561
Cdx2 M00447_2.00	Mus musculus	NWWAYDRNN	NNYHRTWWN	PBM Berger et al.(2008) Cdx2_4272	0.599	0.561
CDX2 M03196_2.00	Homo sapiens	KTTTATKRB	VYMATAAAM	SELEX Jolma et al.(2013) CDX2_1	0.599	0.561
CDX2 M05248_2.00	Homo sapiens	NDTWAYRRYN	NRYYRTWAHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_1	0.599	0.561
CDX2 M05249_2.00	Homo sapiens	NDWWATKRB	VYMATWWHN	SELEX Yin et al.(2017) CDX2_eDBD_HT-SELEX_2	0.599	0.561
CDX2 M08131_2.00	Homo sapiens	YTTTATKRCHB	VDGYMATAAAR	ChIP-seq Mathelier et al.(2014) MA0465.1	0.599	0.561
CDX2 M09152_2.00	Homo sapiens	DTTBATKGCHNB	VNDGCMATVAAH	Misc Kulakovskiy et al.(2013) CDX2_HUMAN.H11MO.0.A	0.599	0.561
Cdx2 M09193_2.00	Mus musculus	BTTTATKRCYBY	RVRGYMATAAAV	Misc Kulakovskiy et al.(2013) CDX2_MOUSE.H11MO.0.A	0.599	0.561
Cdx2 M09572_2.00	Mus musculus	NTTTTATKRC	GYMATAAAAN	Misc Heinz et al.(2010) mES-Cdx2_GSE14586	0.599	0.561
CDX2 M10723_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_01	0.599	0.561
CDX2 M10724_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5_02	0.599	0.561
CDX2 M10725_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q5	0.599	0.561
CDX2 M10726_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX2_Q6	0.599	0.561
CDX2 M05250_2.00	Homo sapiens	NRTCGTAWHBNN	NNVDWTACGAYN	SELEX Yin et al.(2017) CDX2_eDBD_Methyl-HT-SELEX	0.599	0.561
Cdx1 M00427_2.00	Mus musculus	NWWATDRNN	NNYHATWWN	PBM Berger et al.(2008) Cdx1_2245	0.599	0.544
CDX1 M03115_2.00	Homo sapiens	NTTTATKRB	VYMATAAAN	SELEX Jolma et al.(2013) CDX1_1	0.599	0.544
CDX1 M05018_2.00	Homo sapiens	VKTTTATKRCN	NGYMATAAAMB	SELEX Yin et al.(2017) CDX1_eDBD_HT-SELEX	0.599	0.544
CDX1 M09140_2.00	Homo sapiens	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_HUMAN.H11MO.0.C	0.599	0.544
Cdx1 M09186_2.00	Mus musculus	HCWTAAAD	HTTTAWGD	Misc Kulakovskiy et al.(2013) CDX1_MOUSE.H11MO.0.C	0.599	0.544
CDX1 M10670_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q4	0.599	0.544
CDX1 M10671_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$CDX1_Q5	0.599	0.544
CDX1 M05019_2.00	Homo sapiens	NGTCGTAAAWB	VWTTTACGACN	SELEX Yin et al.(2017) CDX1_eDBD_Methyl-HT-SELEX	0.599	0.544
CDX4 M05129_2.00	Homo sapiens	VKTTTATKRCH	DGYMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_HT-SELEX	0.599	0.526
Cdx4 M09197_2.00	Mus musculus	WGATTTATDRBH	DVYHATAAATCW	Misc Kulakovskiy et al.(2013) CDX4_MOUSE.H11MO.0.A	0.599	0.526
CDX4 M05130_2.00	Homo sapiens	BGTCGTAAAHN	NDTTTACGACV	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_1	0.599	0.526
CDX4 M05131_2.00	Homo sapiens	VKTTTATKGCN	NGCMATAAAMB	SELEX Yin et al.(2017) CDX4_FL_Methyl-HT-SELEX_2	0.599	0.526
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSTGUP00000017241	Homeodomain	16	72	RKKRVPYTKPQLKELEREFAASRFITKEKRRRISAATSLSERQVTIWFQNRRVKEKK

Links
Other Homeodomain family TFs
Other *Taeniopygia guttata* TFs

455 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000011505	Ailuropoda melanoleuca	ENSAMEG00000011505	N	0.000
ENSP00000358590-D1	Bos grunniens	ENSP00000358590-D1	N	0.000
ZNF292	Bos taurus	ENSBTAG00000046612	N	0.000
ZNF292	Callithrix jacchus	ENSCJAG00000000634	N	0.000
ZNF292	Canis familiaris	ENSCAFG00000003045	N	0.000
ZNF292	Cavia porcellus	ENSCPOG00000008644	N	0.000
ENSCSAG00000017359	Chlorocebus sabaeus	ENSCSAG00000017359	N	0.000
ZNF292	Choloepus hoffmanni	ENSCHOG00000003324	N	0.000
ZNF292	Dasypus novemcinctus	ENSDNOG00000045555	N	0.000
ZNF292	Equus caballus	ENSECAG00000018906	N	0.000
ZNF292	Felis catus	ENSFCAG00000000698	N	0.000
ZNF292	Gorilla gorilla	ENSGGOG00000008805	N	0.000
ZNF292	Homo sapiens	ENSG00000188994	N	0.000
ENSSTOG00000025840	Ictidomys tridecemlineatus	ENSSTOG00000025840	N	0.000
ZNF292	Loxodonta africana	ENSLAFG00000007712	N	0.000
ENSP00000358590	Macaca fascicularis	ENSP00000358590	N	0.000
ZNF292	Macaca mulatta	ENSMMUG00000022458	N	0.000
ENSMICG00000008856	Microcebus murinus	ENSMICG00000008856	N	0.000
ENSMPUG00000009584	Mustela putorius furo	ENSMPUG00000009584	N	0.000
Myotis_brandtii_ZNF292_10002981	Myotis brandtii	Myotis_brandtii_ZNF292_10002981	N	0.000
ZNF292	Myotis lucifugus	ENSMLUG00000002535	N	0.000
ENSNLEG00000012921	Nomascus leucogenys	ENSNLEG00000012921	N	0.000
ZNF292	Otolemur garnettii	ENSOGAG00000031301	N	0.000
ENSOARG00000013132	Ovis aries	ENSOARG00000013132	N	0.000
ZNF292	Pan troglodytes	ENSPTRG00000018400	N	0.000
ENSPPYG00000016824	Pongo abelii	ENSPPYG00000016824	N	0.000
Zfp292	Rattus norvegicus	ENSRNOG00000031031	N	0.000
ZNF292	Sorex araneus	ENSSARG00000004191	N	0.000
ENSTSYG00000012884	Tarsius syrichta	ENSTSYG00000012884	N	0.000
ZNF292	Tupaia belangeri	ENSTBEG00000016177	N	0.000

ENSTGUG00000016958 (Taeniopygia guttata) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

455 Related TFs

ENSTGUG00000016958 **(Taeniopygia guttata)
Homeodomain**