hoxb13a (Tetraodon nigroviridis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTNIG00000000761 T216370_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HOXB13
M02092_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Weirauch et al.(2014)
pTH5808 		0.863 0.912
Hoxb13
M00505_2.00 		Mus musculus
NTTWAYDDNN
NNHHRTWAAN		 PBM
Berger et al.(2008)
Hoxb13_3479 		0.863 0.912
HOXB13
M03175_2.00 		Homo sapiens
DTTTTATKGG
CCMATAAAAH		 SELEX
Jolma et al.(2013)
HOXB13_1 		0.863 0.912
HOXB13
M03176_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXB13_2 		0.863 0.912
HOXB13
M05201_2.00 		Homo sapiens
DTTTTATKGGN
NCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_1 		0.863 0.912
HOXB13
M05202_2.00 		Homo sapiens
NCTCGTAAAHH
DDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_HT-SELEX_2 		0.863 0.912
HOXB13
M09149_2.00 		Homo sapiens
TTTTATDRSN
NSYHATAAAA		 Misc
Kulakovskiy et al.(2013)
HXB13_HUMAN.H11MO.0.A 		0.863 0.912
HOXB13
M05203_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Yin et al.(2017)
HOXB13_eDBD_Methyl-HT-SELEX 		0.863 0.912
Hoxc13
M00389_2.00 		Mus musculus
NTTWAYDRNN
NNYHRTWAAN		 PBM
Berger et al.(2008)
Hoxc13_3127 		0.716 0.895
HOXC13
M03129_2.00 		Homo sapiens
NTTTTATTRS
SYAATAAAAN		 SELEX
Jolma et al.(2013)
HOXC13_1 		0.716 0.895
HOXC13
M03130_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXC13_2 		0.716 0.895
HOXC13
M05072_2.00 		Homo sapiens
RKTTTATKGSN
NSCMATAAAMY		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_1 		0.716 0.895
HOXC13
M05073_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_HT-SELEX_2 		0.716 0.895
HOXC13
M10680_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXC13_Q2 		0.716 0.895
HOXC13
M05074_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Yin et al.(2017)
HOXC13_eDBD_Methyl-HT-SELEX 		0.716 0.895
Hoxa13
M00473_2.00 		Mus musculus
NTTWAYDRN
NYHRTWAAN		 PBM
Berger et al.(2008)
Hoxa13_3126 		0.712 0.895
HOXA13
M03098_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_1 		0.712 0.895
HOXA13
M03099_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_2 		0.712 0.895
HOXA13
M03100_2.00 		Homo sapiens
DKTTTATKRS
SYMATAAAMH		 SELEX
Jolma et al.(2013)
HOXA13_3 		0.712 0.895
HOXA13
M03101_2.00 		Homo sapiens
NCTCGTAAAAH
DTTTTACGAGN		 SELEX
Jolma et al.(2013)
HOXA13_4 		0.712 0.895
HOXA13
M04977_2.00 		Homo sapiens
DTTTTATKGGB
VCCMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_1 		0.712 0.895
HOXA13
M04978_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_HT-SELEX_2 		0.712 0.895
HOXA13
M04981_2.00 		Homo sapiens
DTTTTATKRSN
NSYMATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_1 		0.712 0.895
HOXA13
M04982_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_HT-SELEX_2 		0.712 0.895
HOXA13
M09134_2.00 		Homo sapiens
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_HUMAN.H11MO.0.C 		0.712 0.895
Hoxa13
M09202_2.00 		Mus musculus
VDTWTWATKGS
SCMATWAWAHB		 Misc
Kulakovskiy et al.(2013)
HXA13_MOUSE.H11MO.0.C 		0.712 0.895
HOXA13
M10653_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_01 		0.712 0.895
HOXA13
M10654_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXA13_02 		0.712 0.895
HOXA13
M04979_2.00 		Homo sapiens
DTTTTATTRSN
NSYAATAAAAH		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_1 		0.712 0.895
HOXA13
M04980_2.00 		Homo sapiens
NCTCGTAAAHN
NDTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_eDBD_Methyl-HT-SELEX_2 		0.712 0.895
HOXA13
M04983_2.00 		Homo sapiens
DKTTTATTGBN
NVCAATAAAMH		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_1 		0.712 0.895
HOXA13
M04984_2.00 		Homo sapiens
NCTCGTAAAWH
DWTTTACGAGN		 SELEX
Yin et al.(2017)
HOXA13_FL_Methyl-HT-SELEX_2 		0.712 0.895
HOXD13
M00299_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_REF 		0.708 0.860
Hoxd13
M00394_2.00 		Mus musculus
NWTHRYDDN
NHHRYDAWN		 PBM
Berger et al.(2008)
Hoxd13_2356 		0.708 0.860
HOXD13
M03141_2.00 		Homo sapiens
DTTTTATKRS
SYMATAAAAH		 SELEX
Jolma et al.(2013)
HOXD13_1 		0.708 0.860
HOXD13
M03142_2.00 		Homo sapiens
BCTCGTAAAAH
DTTTTACGAGV		 SELEX
Jolma et al.(2013)
HOXD13_2 		0.708 0.860
Hoxd13
M03247_2.00 		Mus musculus
DKTTTATTRS
SYAATAAAMH		 SELEX
Jolma et al.(2013)
Hoxd13_1 		0.708 0.860
Hoxd13
M03248_2.00 		Mus musculus
DDTTTAYKAGN
NCTMRTAAAHH		 SELEX
Jolma et al.(2013)
Hoxd13_2 		0.708 0.860
HOXD13
M05122_2.00 		Homo sapiens
GKTTTATKGSS
SSCMATAAAMC		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_1 		0.708 0.860
HOXD13
M05123_2.00 		Homo sapiens
BCTCGTAAAMH
DKTTTACGAGV		 SELEX
Yin et al.(2017)
HOXD13_eDBD_HT-SELEX_2 		0.708 0.860
HOXD13
M10689_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HOXD13_Q6 		0.708 0.860
HOXD13
M00295_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_N298S 		0.708 0.860
HOXD13
M05124_2.00 		Homo sapiens
DDTTTATTRBB
VVYAATAAAHH		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_1 		0.708 0.860
HOXD13
M05125_2.00 		Homo sapiens
VCTCGTAAAAH
DTTTTACGAGB		 SELEX
Yin et al.(2017)
HOXD13_eDBD_Methyl-HT-SELEX_2 		0.708 0.860
HOXD13
M00300_2.00 		Homo sapiens
WTTTATDR
YHATAAAW		 PBM
Barrera et al.(2016)
HOXD13_S316C 		0.708 0.842
HOXD13
M00293_2.00 		Homo sapiens
NTTWAYDDNN
NNHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_I297V 		0.707 0.842
HOXD13
M00298_2.00 		Homo sapiens
NTTWAYDDN
NHHRTWAAN		 PBM
Barrera et al.(2016)
HOXD13_R306W 		0.700 0.842
hoxd13a
M02081_2.00 		Danio rerio
WTTTATDR
YHATAAAW		 PBM
Weirauch et al.(2014)
pTH6143 		0.694 0.754
HOXD13
M00294_2.00 		Homo sapiens
THGTWAAW
WTTWACDA		 PBM
Barrera et al.(2016)
HOXD13_I322L 		0.690 0.842
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000000506 Homeodomain 254 310

Links

Other Homeodomain family TFs
Other Tetraodon nigroviridis TFs

261 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI003697 Acyrthosiphon pisum ACYPI003697 N
AAEL004097 Aedes aegypti AAEL004097 N
AALB009972 Anopheles albimanus AALB009972 N
AARA003420 Anopheles arabiensis AARA003420 N
AATE003836 Anopheles atroparvus AATE003836 N
ACHR005166 Anopheles christyi ACHR005166 N
ACOM026226 Anopheles coluzzii ACOM026226 N
ADAC001260 Anopheles darlingi ADAC001260 N
ADIR000502 Anopheles dirus ADIR000502 N
AFAF001212 Anopheles farauti AFAF001212 N
AFUN009606 Anopheles funestus AFUN009606 N
AGAP012342 Anopheles gambiae AGAP012342 N
AMAM003031 Anopheles maculatus AMAM003031 N
AMEC021898 Anopheles melas AMEC021898 N
AMEM007635 Anopheles merus AMEM007635 N
AMIN009356 Anopheles minimus AMIN009356 N
AQUA002997 Anopheles quadriannulatus AQUA002997 N
ASTEI02368 Anopheles stephensi ASTEI02368 N
GB43788 Apis mellifera GB43788 N
GB43778 Apis mellifera GB43778 N
ACEP15313 Atta cephalotes ACEP15313 N
ACEP15330 Atta cephalotes ACEP15330 N
ACEP15314 Atta cephalotes ACEP15314 N
BGIBMGA008965 Bombyx mori BGIBMGA008965 N
BGIBMGA008915 Bombyx mori BGIBMGA008915 N
Cflo_06471--XP_001120327.1_APIME Camponotus floridanus Cflo_06471--XP_001120327.1_APIME N
Cflo_09321--XP_393312.1_APIME Camponotus floridanus Cflo_09321--XP_393312.1_APIME N
Cflo_12495--XP_001120327.1_APIME Camponotus floridanus Cflo_12495--XP_001120327.1_APIME N
CLEC002262 Cimex lectularius CLEC002262 N
CLEC002260 Cimex lectularius CLEC002260 N
CpipJ_CPIJ003409 Culex pipiens CpipJ_CPIJ003409 N
CPIJ003409 Culex quinquefasciatus CPIJ003409 N
KGM_14329 Danaus plexippus KGM_14329 N
KGM_04455 Danaus plexippus KGM_04455 N
DAPPUDRAFT_64307 Daphnia pulex DAPPUDRAFT_64307 N
DAPPUDRAFT_299514 Daphnia pulex DAPPUDRAFT_299514 N
YQE_12730 Dendroctonus ponderosae YQE_12730 N
YQE_12733 Dendroctonus ponderosae YQE_12733 N
HHAL003217-PA Halyomorpha halys HHAL003217-PA N
Hsal_08372--XP_393312.1_APIME Harpegnathos saltator Hsal_08372--XP_393312.1_APIME N
Hsal_08385--XP_001120327.1_APIME Harpegnathos saltator Hsal_08385--XP_001120327.1_APIME N
HMEL008302 Heliconius melpomene HMEL008302 N
HMEL013921 Heliconius melpomene HMEL013921 N
LDEC006635 Leptinotarsa decemlineata LDEC006635 N
LDEC006636 Leptinotarsa decemlineata LDEC006636 N
LDEC015408 Leptinotarsa decemlineata LDEC015408 N
LLOJ009833 Lutzomyia longipalpis LLOJ009833 N
LLOJ005066 Lutzomyia longipalpis LLOJ005066 N
MCINX007973 Melitaea cinxia MCINX007973 N
PHUM375930 Pediculus humanus PHUM375930 N
PHUM375920 Pediculus humanus PHUM375920 N
PPAI000981 Phlebotomus papatasi PPAI000981 N
RPRC006229 Rhodnius prolixus RPRC006229 N
SINV15880 Solenopsis invicta SINV15880 N
SINV15898 Solenopsis invicta SINV15898 N
TC005541 Tribolium castaneum TC005541 N
TC006580 Tribolium castaneum TC006580 N
L798_10928 Zootermopsis nevadensis L798_10928 I
L798_10927 Zootermopsis nevadensis L798_10927 N
L798_10924 Zootermopsis nevadensis L798_10924 I