six9 (Takifugu rubripes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTRUG00000005083 T216649_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.658 0.607
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.658 0.607
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.658 0.607
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.658 0.607
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.658 0.607
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.658 0.607
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.658 0.607
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.658 0.607
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.658 0.571
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.658 0.571
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.658 0.571
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.658 0.571
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.658 0.571
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.658 0.571
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.658 0.571
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.658 0.571
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.656 0.589
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.656 0.589
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.656 0.589
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.656 0.589
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.656 0.589
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.656 0.589
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.656 0.589
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.656 0.589
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.656 0.589
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.656 0.589
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000012197 Homeodomain 119 174

Links

Other Homeodomain family TFs
Other Takifugu rubripes TFs

278 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
csin102848 Clonorchis sinensis csin102848 N
csin102850 Clonorchis sinensis csin102850 N
DILT_0001696201 Diphyllobothrium latum DILT_0001696201 N
ECANG7_06502 Echinococcus canadensis ECANG7_06502 N
EmuJ_000512900 Echinococcus multilocularis EmuJ_000512900 N
ECPE_0000363401 Echinostoma caproni ECPE_0000363401 N
D915_00211 Fasciola hepatica D915_00211 N
D915_00212 Fasciola hepatica D915_00212 N
HmN_000585600 Hymenolepis microstoma HmN_000585600 N
HNAJ_0000830001 Hymenolepis nana HNAJ_0000830001 N
MCOS_0000850601 Mesocestoides corti MCOS_0000850601 N
T265_12478 Opisthorchis viverrini T265_12478 N
SCUD_0000411301 Schistosoma curassoni SCUD_0000411301 N
A_02754 Schistosoma haematobium A_02754 N
A_00505 Schistosoma haematobium A_00505 N
Sjc_0067910 Schistosoma japonicum Sjc_0067910 N
Smp_157870 Schistosoma mansoni Smp_157870 N
Smp_157860 Schistosoma mansoni Smp_157860 N
SMRZ_0000063601 Schistosoma margrebowiei SMRZ_0000063601 N
SMRZ_0000682801 Schistosoma margrebowiei SMRZ_0000682801 N
SMTD_0000121801 Schistosoma mattheei SMTD_0000121801 N
SMTD_0000598901 Schistosoma mattheei SMTD_0000598901 N
SROB_0000894001 Schistosoma rodhaini SROB_0000894001 N
SROB_0001641201 Schistosoma rodhaini SROB_0001641201 N
SMU15003740 Schmidtea mediterranea SMU15003740 N
SPER_0000785701 Spirometra erinaceieuropaei SPER_0000785701 N
TsM_000931800 Taenia solium TsM_000931800 N
TRE_0001551901 Trichobilharzia regenti TRE_0001551901 N