six6a (Takifugu rubripes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTRUG00000010571 T216725_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.867 1.000
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.867 1.000
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.867 1.000
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.867 1.000
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.865 0.982
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.865 0.982
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.865 0.982
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.982
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.865 0.982
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.947
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.865 0.930
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.865 0.930
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.865 0.930
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.865 0.930
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.860 0.982
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000026677 Homeodomain 149 205
ENSTRUP00000026678 Homeodomain 129 185

Links

Other Homeodomain family TFs
Other Takifugu rubripes TFs

297 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cmyd_10015037 Chelonia mydas Cmyd_10015037 N
Cmyd_10012062 Chelonia mydas Cmyd_10012062 N
Cmyd_10012141 Chelonia mydas Cmyd_10012141 N
Cmyd_10012340 Chelonia mydas Cmyd_10012340 N
Cmyd_10012472 Chelonia mydas Cmyd_10012472 N
Cmyd_10012695 Chelonia mydas Cmyd_10012695 N
Cmyd_10012804 Chelonia mydas Cmyd_10012804 N
Cmyd_10012830 Chelonia mydas Cmyd_10012830 N
Cmyd_10012986 Chelonia mydas Cmyd_10012986 N
Cmyd_10013046 Chelonia mydas Cmyd_10013046 N
Cmyd_10013772 Chelonia mydas Cmyd_10013772 N
Cmyd_10013937 Chelonia mydas Cmyd_10013937 N
Cmyd_10014427 Chelonia mydas Cmyd_10014427 N
Cmyd_10014771 Chelonia mydas Cmyd_10014771 N
Cmyd_10012053 Chelonia mydas Cmyd_10012053 N
Cmyd_10015203 Chelonia mydas Cmyd_10015203 N
Cmyd_10015316 Chelonia mydas Cmyd_10015316 N
Cmyd_10016076 Chelonia mydas Cmyd_10016076 N
Cmyd_10016112 Chelonia mydas Cmyd_10016112 N
Cmyd_10016495 Chelonia mydas Cmyd_10016495 N
Cmyd_10016498 Chelonia mydas Cmyd_10016498 N
Cmyd_10016549 Chelonia mydas Cmyd_10016549 N
Cmyd_10016989 Chelonia mydas Cmyd_10016989 N
Cmyd_10017127 Chelonia mydas Cmyd_10017127 N
Cmyd_10017310 Chelonia mydas Cmyd_10017310 N
Cmyd_10017755 Chelonia mydas Cmyd_10017755 N
Cmyd_10017906 Chelonia mydas Cmyd_10017906 N
Cmyd_10018053 Chelonia mydas Cmyd_10018053 N
Cmyd_10007297 Chelonia mydas Cmyd_10007297 N
Cmyd_10001989 Chelonia mydas Cmyd_10001989 N
Cmyd_10003126 Chelonia mydas Cmyd_10003126 N
Cmyd_10003232 Chelonia mydas Cmyd_10003232 N
Cmyd_10003654 Chelonia mydas Cmyd_10003654 N
Cmyd_10004410 Chelonia mydas Cmyd_10004410 N
Cmyd_10004478 Chelonia mydas Cmyd_10004478 N
Cmyd_10005354 Chelonia mydas Cmyd_10005354 N
Cmyd_10005732 Chelonia mydas Cmyd_10005732 N
Cmyd_10006621 Chelonia mydas Cmyd_10006621 N
Cmyd_10006722 Chelonia mydas Cmyd_10006722 N
Cmyd_10006724 Chelonia mydas Cmyd_10006724 N
Cmyd_10007153 Chelonia mydas Cmyd_10007153 N
Cmyd_10007273 Chelonia mydas Cmyd_10007273 N
Cmyd_10001489 Chelonia mydas Cmyd_10001489 N
Cmyd_10007685 Chelonia mydas Cmyd_10007685 N
Cmyd_10007900 Chelonia mydas Cmyd_10007900 N
Cmyd_10008315 Chelonia mydas Cmyd_10008315 N
Cmyd_10008565 Chelonia mydas Cmyd_10008565 N
Cmyd_10008690 Chelonia mydas Cmyd_10008690 N
Cmyd_10009364 Chelonia mydas Cmyd_10009364 N
Cmyd_10009391 Chelonia mydas Cmyd_10009391 N
Cmyd_10009634 Chelonia mydas Cmyd_10009634 N
Cmyd_10009827 Chelonia mydas Cmyd_10009827 N
Cmyd_10011070 Chelonia mydas Cmyd_10011070 N
Cmyd_10011123 Chelonia mydas Cmyd_10011123 N
Cmyd_10011536 Chelonia mydas Cmyd_10011536 N
Cmyd_10011918 Chelonia mydas Cmyd_10011918 N