GA14941 (Drosophila pseudoobscura)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0074967 T217559_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Optix
M02124_2.00 		Drosophila melanogaster
NNNNNDATMN
NKATHNNNNN		 PBM
Weirauch et al.(2014)
pTH5437 		0.867 1.000
Optix
M03850_2.00 		Drosophila melanogaster
TAATYTAATTA
TAATTARATTA		 SELEX
Nitta et al.(2015)
Optix_1 		0.867 1.000
Optix
M06526_2.00 		Drosophila melanogaster
TGATA
TATCA		 B1H
Mathelier et al.(2014)
MA0199.1 		0.867 1.000
Optix
M06327_2.00 		Drosophila melanogaster
HHVTGATA
TATCABDD		 B1H
Zhu et al.(2011)
Optix_Cell_FBgn0025360 		0.867 1.000
Optix
M06328_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
Optix_SOLEXA_FBgn0025360 		0.867 1.000
Six3
M00483_2.00 		Mus musculus
NNNAYMN
NKRTNNN		 PBM
Berger et al.(2008)
Six3_1732 		0.867 0.947
SIX3
M05159_2.00 		Homo sapiens
NNYGATABBN
NVVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_HT-SELEX 		0.867 0.947
SIX3
M10698_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX3_Q6 		0.867 0.947
SIX3
M05160_2.00 		Homo sapiens
NNYGATABVB
VBVTATCRNN		 SELEX
Yin et al.(2017)
SIX3_eDBD_Methyl-HT-SELEX 		0.867 0.947
SIX6
M00326_2.00 		Homo sapiens
NNDATMB
VKATHNN		 PBM
Barrera et al.(2016)
SIX6_REF 		0.865 0.930
Six6
M00169_2.00 		Mus musculus
NNAYMNN
NNKRTNN		 PBM
Badis et al.(2009)
Six6_2267 		0.865 0.930
Six6
M00412_2.00 		Mus musculus
NNNTGATAYCN
NGRTATCANNN		 PBM
Berger et al.(2008)
Six6_2267 		0.865 0.930
six3
M02102_2.00 		Oryzias latipes
NNDAYMBNNN
NNNVKRTHNN		 PBM
Weirauch et al.(2014)
pTH5928 		0.865 0.930
SIX6
M05357_2.00 		Homo sapiens
NNYGATASVB
VBSTATCRNN		 SELEX
Yin et al.(2017)
SIX6_eDBD_HT-SELEX 		0.865 0.930
SIX6
M00325_2.00 		Homo sapiens
NNNDATMB
VKATHNNN		 PBM
Barrera et al.(2016)
SIX6_H141N 		0.865 0.930
SIX6
M05358_2.00 		Homo sapiens
VBVYAYCRNN
NNYGRTRBVB		 SELEX
Yin et al.(2017)
SIX6_eDBD_Methyl-HT-SELEX 		0.865 0.930
SIX6
M00327_2.00 		Homo sapiens
NHDAYMBNN
NNVKRTHDN		 PBM
Barrera et al.(2016)
SIX6_T165A 		0.859 0.912
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0277685 Homeodomain 157 213

Links

Other Homeodomain family TFs
Other Drosophila pseudoobscura TFs

296 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF544 Callithrix jacchus ENSCJAG00000000329 I
ENSCAFG00000002372 Canis familiaris ENSCAFG00000002372 I
ENSCSAG00000001603 Chlorocebus sabaeus ENSCSAG00000001603 I
ZNF8 Choloepus hoffmanni ENSCHOG00000003202 I
Zfp128 Dipodomys ordii ENSDORG00000013595 I
ZNF8 Equus caballus ENSECAG00000013553 I
ENSGGOG00000023358 Gorilla gorilla ENSGGOG00000023358 I
ENSGGOG00000025136 Gorilla gorilla ENSGGOG00000025136 I
ZNF8 Homo sapiens ENSG00000278129 D
ENSSTOG00000023739 Ictidomys tridecemlineatus ENSSTOG00000023739 I
ENSP00000196548 Macaca fascicularis ENSP00000196548 I
ZNF8 Macaca mulatta ENSMMUG00000020508 I
ENSMPUG00000008370 Mustela putorius furo ENSMPUG00000008370 I
ENSNLEG00000011130 Nomascus leucogenys ENSNLEG00000011130 I
ZNF8 Ochotona princeps ENSOPRG00000007396 I
ZNF8 Oryctolagus cuniculus ENSOCUG00000029759 I
ZNF8 Pan troglodytes ENSPTRG00000011584 I
ENSPPYG00000010495 Pongo abelii ENSPPYG00000010495 I
ZNF8 Pteropus vampyrus ENSPVAG00000002939 I
Zfp128 Rattus norvegicus ENSRNOG00000031459 I
ZNF8 Sorex araneus ENSSARG00000001458 I
ZNF8 Tupaia belangeri ENSTBEG00000000043 I