GE22732 (Drosophila yakuba)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 FBgn0239938 T218364_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.867 1.000
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.867 1.000
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.867 1.000
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.867 1.000
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.867 1.000
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.848 0.811
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.848 0.811
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.848 0.811
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.848 0.811
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.827 0.792
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.827 0.792
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.827 0.792
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.827 0.792
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.827 0.792
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.708 0.717
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.708 0.717
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.708 0.717
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.708 0.717
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.708 0.717
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.708 0.717
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.708 0.717
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.708 0.717
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.708 0.698
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.708 0.698
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.708 0.698
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.708 0.698
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.708 0.698
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.708 0.698
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.708 0.698
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.708 0.698
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.708 0.698
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.708 0.698
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.708 0.698
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.708 0.698
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.708 0.698
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.708 0.698
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.708 0.698
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.708 0.698
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.708 0.698
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.708 0.698
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.633 0.547
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0267742 Homeodomain 301 353

Links

Other Homeodomain family TFs
Other Drosophila yakuba TFs

541 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013653 Aedes aegypti AAEL013653 N
AALB008022 Anopheles albimanus AALB008022 N
AARA008085 Anopheles arabiensis AARA008085 N
AARA002613 Anopheles arabiensis AARA002613 N
AATE004417 Anopheles atroparvus AATE004417 N
ACHR003814 Anopheles christyi ACHR003814 N
ACHR000830 Anopheles christyi ACHR000830 N
ACOM025760 Anopheles coluzzii ACOM025760 N
ACUA022967 Anopheles culicifacies ACUA022967 N
ACUA017562 Anopheles culicifacies ACUA017562 N
ADAC005282 Anopheles darlingi ADAC005282 N
ADIR007200 Anopheles dirus ADIR007200 N
ADIR001353 Anopheles dirus ADIR001353 N
AEPI009152 Anopheles epiroticus AEPI009152 N
AEPI005949 Anopheles epiroticus AEPI005949 N
AFAF018377 Anopheles farauti AFAF018377 N
AFAF013567 Anopheles farauti AFAF013567 N
AFUN003868 Anopheles funestus AFUN003868 N
AFUN001038 Anopheles funestus AFUN001038 N
AGAP007517 Anopheles gambiae AGAP007517 N
AGAP000336 Anopheles gambiae AGAP000336 N
AMAM019785 Anopheles maculatus AMAM019785 N
AMEC000435 Anopheles melas AMEC000435 N
AMEC017669 Anopheles melas AMEC017669 N
AMEM008561 Anopheles merus AMEM008561 N
AMEM015155 Anopheles merus AMEM015155 N
AMIN010411 Anopheles minimus AMIN010411 N
AMIN005487 Anopheles minimus AMIN005487 N
AQUA004406 Anopheles quadriannulatus AQUA004406 N
AQUA007272 Anopheles quadriannulatus AQUA007272 N
ASIS017447 Anopheles sinensis ASIS017447 N
ASTEI08810 Anopheles stephensi ASTEI08810 N
GB45421 Apis mellifera GB45421 N
ACEP26919 Atta cephalotes ACEP26919 N
BGIBMGA003121 Bombyx mori BGIBMGA003121 N
Cflo_02113--XP_396371.3_APIME Camponotus floridanus Cflo_02113--XP_396371.3_APIME N
CGI_10021242 Crassostrea gigas CGI_10021242 N
KGM_18877 Danaus plexippus KGM_18877 N
DAPPUDRAFT_304868 Daphnia pulex DAPPUDRAFT_304868 N
YQE_07182 Dendroctonus ponderosae YQE_07182 N
GF21727 Drosophila ananassae FBgn0098727 N
GG18249 Drosophila erecta FBgn0110465 N
GH11849 Drosophila grimshawi FBgn0119328 N
Trf2 Drosophila melanogaster FBgn0261793 N
GI15474 Drosophila mojavensis FBgn0138223 N
GI14331 Drosophila mojavensis FBgn0137084 N
GL16412 Drosophila persimilis FBgn0154016 N
GA14764 Drosophila pseudoobscura FBgn0074791 N
GM21561 Drosophila sechellia FBgn0176441 N
GJ17285 Drosophila virilis FBgn0204460 N
GJ19385 Drosophila virilis FBgn0206528 N
GK16294 Drosophila willistoni FBgn0218296 N
GE15780 Drosophila yakuba FBgn0233345 N
HHAL006636-PA Halyomorpha halys HHAL006636-PA N
Hsal_05746--XP_396371.3_APIME Harpegnathos saltator Hsal_05746--XP_396371.3_APIME N
HMEL012402 Heliconius melpomene HMEL012402 N
ISCW018321 Ixodes scapularis ISCW018321 N
LDEC018353 Leptinotarsa decemlineata LDEC018353 N
LCUP013707 Lucilia cuprina LCUP013707 N
MCINX007554 Melitaea cinxia MCINX007554 N
MDOA002006 Musca domestica MDOA002006 N
NV17354 Nasonia vitripennis NV17354 N
PHUM375280 Pediculus humanus PHUM375280 N
PPAI002384 Phlebotomus papatasi PPAI002384 N
RPRC008747 Rhodnius prolixus RPRC008747 N
SINV24562 Solenopsis invicta SINV24562 N
SMAR014284 Strigamia maritima SMAR014284 N
L798_06110 Zootermopsis nevadensis L798_06110 N