CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GSMUA_Achr4G28360_001 *(Musa acuminata)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	GSMUA_Achr4G28360_001	T219160_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-9 M06898_2.00	Arabidopsis thaliana	DWWDRTAATGATKAH	DTMATCATTAYHWWH	Dap-seq OMalley et al.(2016) PHV_col_a	0.866	0.964
ATHB-9 M02682_2.00	Arabidopsis thaliana	HNHHGTAATGATTRCDYBS	SVRHGYAATCATTACDDND	SELEX Mathelier et al.(2014) MA0573.1	0.866	0.964
ATHB-9 M10623_2.00	Arabidopsis thaliana	HNHHGTAATGATTRCDYBS	SVRHGYAATCATTACDDND	Transfac Matys et al.(2006) P$ATHB9_01	0.866	0.964
ATHB-15 M00864_2.00	Arabidopsis thaliana	AATAATTACT	AGTAATTATT	PBM Franco-Zorrilla et al.(2014) ICU4	0.861	0.929
ATHB-15 M06899_2.00	Arabidopsis thaliana	DWWDRTAATGATKAH	DTMATCATTAYHWWH	Dap-seq OMalley et al.(2016) ATHB15_col_a	0.861	0.929
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
GSMUA_Achr4P28360_001	Homeodomain	23	82	GKYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQ

Links
Other Homeodomain family TFs
Other *Musa acuminata* TFs

335 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZFP30	Callithrix jacchus	ENSCJAG00000009479	N	0.000
ENSCSAG00000004151	Chlorocebus sabaeus	ENSCSAG00000004151	N	0.000
ZFP30	Dasypus novemcinctus	ENSDNOG00000032824	N	0.000
ENSDORG00000001378	Dipodomys ordii	ENSDORG00000001378	N	0.000
ZFP30	Equus caballus	ENSECAG00000017215	N	0.000
ZFP30	Gorilla gorilla	ENSGGOG00000016654	N	0.000
ZFP30	Homo sapiens	ENSG00000120784	N	0.000
ENSSTOG00000005694	Ictidomys tridecemlineatus	ENSSTOG00000005694	N	0.000
ZFP30	Loxodonta africana	ENSLAFG00000004782	N	0.000
ENSMMUP00000002578	Macaca fascicularis	ENSMMUP00000002578	N	0.000
ENSMMUG00000001933	Macaca mulatta	ENSMMUG00000001933	N	0.000
Zfp30	Mus musculus	ENSMUSG00000047473	N	0.000
Myotis_brandtii_ZFP30_10005467	Myotis brandtii	Myotis_brandtii_ZFP30_10005467	N	0.000
ZFP30	Myotis lucifugus	ENSMLUG00000012181	N	0.000
ENSNLEG00000016977	Nomascus leucogenys	ENSNLEG00000016977	N	0.000
ZFP30	Oryctolagus cuniculus	ENSOCUG00000010157	N	0.000
ZFP30	Otolemur garnettii	ENSOGAG00000013495	N	0.000
ZFP30	Pan troglodytes	ENSPTRG00000010914	N	0.000
ENSPANG00000019660	Papio anubis	ENSPANG00000019660	N	0.000
ENSPPYG00000009918	Pongo abelii	ENSPPYG00000009918	N	0.000
ZFP30	Pteropus vampyrus	ENSPVAG00000006214	N	0.000
Zfp30	Rattus norvegicus	ENSRNOG00000055519	N	0.000
ZFP30	Sorex araneus	ENSSARG00000000413	N	0.000
ZFP30	Sus scrofa	ENSSSCG00000029408	N	0.000
ENSTSYG00000010884	Tarsius syrichta	ENSTSYG00000010884	N	0.000
ZFP30	Vicugna pacos	ENSVPAG00000010720	N	0.000