OB03G11840 (Oryza brachyantha)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OB03G11840 T221233_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.830 0.673
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.571
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.429
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OB03G11840.1 Homeodomain 14 65

Links

Other Homeodomain family TFs
Other Oryza brachyantha TFs

1004 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000002032 Ailuropoda melanoleuca ENSAMEG00000002032 N 0.000
ENSAPLG00000013426 Anas platyrhynchos ENSAPLG00000013426 N 0.000
KCMF1 Anolis carolinensis ENSACAG00000005906 N 0.000
Afo_R005725 Aptenodytes forsteri Afo_R005725 N 0.000
ENSAMXG00000006684 Astyanax mexicanus ENSAMXG00000006684 N 0.000
ENSBTAP00000052676-D1 Bos grunniens ENSBTAP00000052676-D1 N 0.000
KCMF1 Bos taurus ENSBTAG00000020630 N 0.000
Brh_R013360 Buceros rhinoceros Brh_R013360 N 0.000
KCMF1 Canis familiaris ENSCAFG00000007871 N 0.000
KCMF1 Cavia porcellus ENSCPOG00000023050 N 0.000
Cmyd_10003651 Chelonia mydas Cmyd_10003651 N 0.000
KCMF1 Choloepus hoffmanni ENSCHOG00000005786 N 0.000
kcmf1 Danio rerio ENSDARG00000067656 N 0.000
KCMF1 Dasypus novemcinctus ENSDNOG00000047192 N 0.000
ENSDORG00000002248 Dipodomys ordii ENSDORG00000002248 N 0.000
ENSETEG00000001809 Echinops telfairi ENSETEG00000001809 N 0.000
KCMF1 Equus caballus ENSECAG00000024834 N 0.000
KCMF1 Felis catus ENSFCAG00000026410 N 0.000
ENSFALG00000005137 Ficedula albicollis ENSFALG00000005137 N 0.000
ENSGMOG00000014478 Gadus morhua ENSGMOG00000014478 N 0.000
ENSGALG00000014441 Gallus gallus ENSGALG00000014441 N 0.000
kcmf1 Gasterosteus aculeatus ENSGACG00000016222 N 0.000
Gfo_R004112 Geospiza fortis Gfo_R004112 N 0.000
Gfo_R013520 Geospiza fortis Gfo_R013520 N 0.000
KCMF1 Gorilla gorilla ENSGGOG00000009501 N 0.000
KCMF1 Homo sapiens ENSG00000176407 N 0.000
ENSSTOG00000021528 Ictidomys tridecemlineatus ENSSTOG00000021528 N 0.000
ENSLOCG00000011313 Lepisosteus oculatus ENSLOCG00000011313 N 0.000
KCMF1 Loxodonta africana ENSLAFG00000018643 N 0.000
KCMF1 Macaca mulatta ENSMMUG00000001414 N 0.000
ENSMEUG00000003898 Macropus eugenii ENSMEUG00000003898 N 0.000
KCMF1 Microcebus murinus ENSMICG00000016473 N 0.000
KCMF1 Monodelphis domestica ENSMODG00000015567 N 0.000
ENSMPUG00000008632 Mustela putorius furo ENSMPUG00000008632 N 0.000
Kcmf1 Mus musculus ENSMUSG00000055239 N 0.000
KCMF1 Myotis lucifugus ENSMLUG00000000979 N 0.000
ENSNLEG00000001418 Nomascus leucogenys ENSNLEG00000001418 N 0.000
KCMF1 Ochotona princeps ENSOPRG00000009018 N 0.000
KCMF1 Ornithorhynchus anatinus ENSOANG00000007129 N 0.000
KCMF1 Oryctolagus cuniculus ENSOCUG00000002533 N 0.000
KCMF1 Otolemur garnettii ENSOGAG00000034863 N 0.000
ENSOARG00000020445 Ovis aries ENSOARG00000020445 N 0.000
KCMF1 Pan troglodytes ENSPTRG00000012127 N 0.000
ENSPANG00000007610 Papio anubis ENSPANG00000007610 N 0.000
ENSPSIG00000012230 Pelodiscus sinensis ENSPSIG00000012230 N 0.000
Pvit_16118 Pogona vitticeps Pvit_16118 N 0.000
ENSPPYG00000012235 Pongo abelii ENSPPYG00000012235 N 0.000
KCMF1 Procavia capensis ENSPCAG00000008538 N 0.000
KCMF1 Pteropus vampyrus ENSPVAG00000009122 N 0.000
Kcmf1 Rattus norvegicus ENSRNOG00000015097 N 0.000
ENSSHAG00000009198 Sarcophilus harrisii ENSSHAG00000009198 N 0.000
KCMF1 Sus scrofa ENSSSCG00000008242 N 0.000
KCMF1 Taeniopygia guttata ENSTGUG00000000265 N 0.000
ENSTSYG00000009776 Tarsius syrichta ENSTSYG00000009776 N 0.000
KCMF1 Tupaia belangeri ENSTBEG00000016438 N 0.000
KCMF1 Tursiops truncatus ENSTTRG00000001934 N 0.000
Tal_R012527 Tyto alba Tal_R012527 N 0.000
kcmf1.L Xenopus laevis XB-GENE-1021681 N 0.000
kcmf1 Xenopus tropicalis XB-GENE-1021676 N 0.000