OBART06G00550 (Oryza barthii)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 OBART06G00550 T221340_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.826 0.688
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.638 0.562
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.606 0.417
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.606 0.417
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.606 0.417
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.606 0.417
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART06G00550.1 Homeodomain 76 126

Links

Other Homeodomain family TFs
Other Oryza barthii TFs

1006 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000006054 Anas platyrhynchos ENSAPLG00000006054 I 0.000
Afo_R010549 Aptenodytes forsteri Afo_R010549 I 0.000
ENSAMXG00000015793 Astyanax mexicanus ENSAMXG00000015793 I 0.000
Brh_R007745 Buceros rhinoceros Brh_R007745 I 0.000
ENSFALG00000011806 Ficedula albicollis ENSFALG00000011806 I 0.000
ENSGMOG00000017696 Gadus morhua ENSGMOG00000017696 I 0.000
ENSGALG00000020522 Gallus gallus ENSGALG00000020522 I 0.000
myrf Gasterosteus aculeatus ENSGACG00000005416 I 0.000
Gfo_R011942 Geospiza fortis Gfo_R011942 I 0.000
LotgiG103525 Lottia gigantea LotgiG103525 N 0.000
ENSMMUG00000006501 Macaca mulatta ENSMMUG00000006501 I 0.000
MYRF Meleagris gallopavo ENSMGAG00000004733 I 0.000
Myotis_brandtii_MRF_10005301 Myotis brandtii Myotis_brandtii_MRF_10005301 I 0.000
Ocbimv22003657m.g Octopus bimaculoides Ocbimv22003657m.g N 0.000
ENSONIG00000015523 Oreochromis niloticus ENSONIG00000015523 I 0.000
MYRF Ornithorhynchus anatinus ENSOANG00000003410 I 0.000
MYRF Oryzias latipes ENSORLG00000006459 I 0.000
PHUM368740 Pediculus humanus PHUM368740 N 0.000
ENSPSIG00000015590 Pelodiscus sinensis ENSPSIG00000015590 I 0.000
ENSPFOG00000011050 Poecilia formosa ENSPFOG00000011050 I 0.000
Pvit_15884 Pogona vitticeps Pvit_15884 I 0.000
Sakowv30007714m.g Saccoglossus kowalevskii Sakowv30007714m.g N 0.000
SPU_000601 Strongylocentrotus purpuratus SPU_000601 I 0.000
ENSTGUG00000006600 Taeniopygia guttata ENSTGUG00000006600 I 0.000
MYRF Takifugu rubripes ENSTRUG00000005197 I 0.000
MYRF Tetraodon nigroviridis ENSTNIG00000016074 I 0.000
Tal_R006175 Tyto alba Tal_R006175 I 0.000
ENSXMAG00000003748 Xiphophorus maculatus ENSXMAG00000003748 I 0.000
L798_10085 Zootermopsis nevadensis L798_10085 N 0.000