CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OMERI03G04970 *(Oryza meridionalis)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	OMERI03G04970	T221565_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.861	0.946
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.861	0.946
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.829	0.839
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.817	0.839
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.817	0.839
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.817	0.839
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.817	0.839
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.804	0.821
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.800	0.804
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.800	0.804
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.800	0.804
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.796	0.804
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.796	0.804
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.796	0.804
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.796	0.804
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.738	0.661
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.738	0.661
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.736	0.625
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.736	0.625
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.731	0.589
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.731	0.589
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.719	0.893
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.719	0.893
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.703	0.821
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.703	0.821
ATHB-7 M02043_2.00	Arabidopsis thaliana	NHWTGATTGN	NCAATCAWDN	PBM Weirauch et al.(2014) pTH8090	0.600	0.625
ATHB-7 M06911_2.00	Arabidopsis thaliana	NHYCAATCATTSW	WSAATGATTGRDN	Dap-seq OMalley et al.(2016) ATHB7_col_a	0.600	0.625
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OMERI03G04970.1	Homeodomain	123	178	EKKRRLNVEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Oryza meridionalis* TFs

819 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
csin108921	Clonorchis sinensis	csin108921	N	0.000
DILT_0000577901	Diphyllobothrium latum	DILT_0000577901	N	0.000
EmuJ_000778700	Echinococcus multilocularis	EmuJ_000778700	N	0.000
D915_11842	Fasciola hepatica	D915_11842	N	0.000
TTAC_0000732001	Hydatigera taeniaeformis	TTAC_0000732001	N	0.000
HDID_0000598801	Hymenolepis diminuta	HDID_0000598801	N	0.000
HmN_000033300	Hymenolepis microstoma	HmN_000033300	N	0.000
HNAJ_0000042001	Hymenolepis nana	HNAJ_0000042001	N	0.000
MCOS_0000679701	Mesocestoides corti	MCOS_0000679701	N	0.000
T265_01358	Opisthorchis viverrini	T265_01358	N	0.000
PXEA_0001247401	Protopolystoma xenopodis	PXEA_0001247401	N	0.000
SSLN_0000459001	Schistocephalus solidus	SSLN_0000459001	N	0.000
SCUD_0001455301	Schistosoma curassoni	SCUD_0001455301	N	0.000
A_03828	Schistosoma haematobium	A_03828	N	0.000
Sjc_0067240	Schistosoma japonicum	Sjc_0067240	N	0.000
Smp_049160	Schistosoma mansoni	Smp_049160	N	0.000
SMRZ_0001877501	Schistosoma margrebowiei	SMRZ_0001877501	N	0.000
SMTD_0001334601	Schistosoma mattheei	SMTD_0001334601	N	0.000
SROB_0001082601	Schistosoma rodhaini	SROB_0001082601	N	0.000
SPER_0000847701	Spirometra erinaceieuropaei	SPER_0000847701	N	0.000
TASK_0000020501	Taenia asiatica	TASK_0000020501	N	0.000
TsM_000748400	Taenia solium	TsM_000748400	N	0.000
TRE_0001157701	Trichobilharzia regenti	TRE_0001157701	N	0.000

OMERI03G04970 (Oryza meridionalis) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

819 Related TFs

OMERI03G04970 **(Oryza meridionalis)
Homeodomain**