ORGLA03G0273900 (Oryza glaberrima)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ORGLA03G0273900 T221832_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.843 0.755
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.408
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.408
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.408
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ORGLA03G0273900.1 Homeodomain 390 441

Links

Other Homeodomain family TFs
Other Oryza glaberrima TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CH063_11818 Colletotrichum higginsianum CH063_11818 N 0.000
CCM_06107 Cordyceps militaris CCM_06107 N 0.000
estExt_Genewise1Plus.C_chr_51033 Mycosphaerella graminicola estExt_Genewise1Plus.C_chr_51033 N 0.000
PV09_03952 Verruconis gallopava PV09_03952 N 0.000