PGSC0003DMG400026460 (Solanum tuberosum)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 PGSC0003DMG400026460 T222210_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.864 0.929
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.864 0.929
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.864 0.929
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.860 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.860 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400068035 Homeodomain 15 74
PGSC0003DMT400068037 Homeodomain 15 74
PGSC0003DMT400068039 Homeodomain 15 74

Links

Other Homeodomain family TFs
Other Solanum tuberosum TFs

336 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_31091 Aegilops tauschii F775_31091 N
AMTR_s00110p00030150 Amborella trichopoda AMTR_s00110p00030150 I
BRADI5G21950 Brachypodium distachyon BRADI5G21950 N
Bra000283 Brassica rapa Bra000283 I
Cla018863 Citrullus lanatus Cla018863 I
Cucsa.113040 Cucumis sativus Cucsa.113040 I
GLYMA02G45150 Glycine max GLYMA02G45150 I
GLYMA14G03600 Glycine max GLYMA14G03600 I
MLOC_36345 Hordeum vulgare MLOC_36345 N
Lus10020727.g Linum usitatissimum Lus10020727.g I
Lus10029805.g Linum usitatissimum Lus10029805.g I
ORGLA04G0225800 Oryza glaberrima ORGLA04G0225800 N
OGLUM04G25420 Oryza glumaepatula OGLUM04G25420 N
BGIOSGA017139 Oryza indica BGIOSGA017139 N
OMERI04G21140 Oryza meridionalis OMERI04G21140 N
ONIVA04G24530 Oryza nivara ONIVA04G24530 N
OPUNC04G23040 Oryza punctata OPUNC04G23040 N
OPUNC04G23010 Oryza punctata OPUNC04G23010 N
ORUFI04G27110 Oryza rufipogon ORUFI04G27110 N
OS04G0618600 Oryza sativa OS04G0618600 N
Pavir.Gb00491 Panicum virgatum Pavir.Gb00491 N
Pavir.J18207 Panicum virgatum Pavir.J18207 N
gw1.147.92.1 Physcomitrella patens gw1.147.92.1 I
estExt_fgenesh1_pg.C_690022 Physcomitrella patens estExt_fgenesh1_pg.C_690022 I
estExt_fgenesh1_pg.C_680048 Physcomitrella patens estExt_fgenesh1_pg.C_680048 I
e_gw1.84.236.1 Physcomitrella patens e_gw1.84.236.1 I
SELMODRAFT_39143 Selaginella moellendorffii SELMODRAFT_39143 I
SELMODRAFT_114141 Selaginella moellendorffii SELMODRAFT_114141 I
SELMODRAFT_116654 Selaginella moellendorffii SELMODRAFT_116654 I
SELMODRAFT_118904 Selaginella moellendorffii SELMODRAFT_118904 I
SELMODRAFT_29179 Selaginella moellendorffii SELMODRAFT_29179 I
Si011759m.g Setaria italica Si011759m.g N
Sb06g028750 Sorghum bicolor Sb06g028750 N
Traes_2DL_46C827FAC Triticum aestivum Traes_2DL_46C827FAC N
Traes_2DL_46C827FAC1 Triticum aestivum Traes_2DL_46C827FAC1 N
Traes_2DL_0B1444B68 Triticum aestivum Traes_2DL_0B1444B68 N
Traes_2BL_A1F9C66CA Triticum aestivum Traes_2BL_A1F9C66CA N
Traes_2AL_67BC3AFBE Triticum aestivum Traes_2AL_67BC3AFBE N
TRIUR3_18209 Triticum urartu TRIUR3_18209 N
GRMZM2G080054 Zea mays GRMZM2G080054 N
GRMZM2G042920 Zea mays GRMZM2G042920 N