POPTR_0002s11410 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0002s11410 T222479_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAT22
M06926_2.00 		Arabidopsis thaliana
NNYAATCATT
AATGATTRNN		 Dap-seq
OMalley et al.(2016)
HAT22_col_a 		0.813 0.860
ATHB-X
M06902_2.00 		Arabidopsis thaliana
HHAATRATTRN
NYAATYATTDD		 Dap-seq
OMalley et al.(2016)
ATHB18_col_a 		0.789 0.702
ATHB-X
M06903_2.00 		Arabidopsis thaliana
NYAATGATTRV
BYAATCATTRN		 Dap-seq
OMalley et al.(2016)
ATHB18_colamp_a 		0.789 0.702
HAT2
M06929_2.00 		Arabidopsis thaliana
NHAATGATTRN
NYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT2_colamp_a 		0.776 0.719
HAT2
M06930_2.00 		Arabidopsis thaliana
WNYAATCATWD
HWATGATTRNW		 Dap-seq
OMalley et al.(2016)
HAT2_col_v31 		0.776 0.719
HAT1
M02047_2.00 		Arabidopsis thaliana
NMATGATTRN
NYAATCATKN		 PBM
Weirauch et al.(2014)
pTH8107 		0.774 0.719
HAT1
M06922_2.00 		Arabidopsis thaliana
NHAATGATTRNNWDW
WHWNNYAATCATTDN		 Dap-seq
OMalley et al.(2016)
HAT1_col_a 		0.774 0.719
HAT1
M06923_2.00 		Arabidopsis thaliana
NYAATCATTDN
NHAATGATTRN		 Dap-seq
OMalley et al.(2016)
HAT1_colamp_a 		0.774 0.719
HAT3
M00728_2.00 		Arabidopsis thaliana
DTGATTRV
BYAATCAH		 PBM
Chang et al.(2013)
pTH7400 		0.748 0.772
ATHB-4
M01065_2.00 		Arabidopsis thaliana
NBMTGCATRNN
NNYATGCAKVN		 PBM
Sullivan et al.(2014)
pTH8184 		0.748 0.754
ATHB-4
M02042_2.00 		Arabidopsis thaliana
NNWTNATTRN
NYAATNAWNN		 PBM
Weirauch et al.(2014)
pTH8667 		0.748 0.754
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0002s11410.1 Homeodomain 123 179

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

693 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZNF282 Bos taurus ENSBTAG00000020448 I 0.000
ENSCSAG00000007010 Chlorocebus sabaeus ENSCSAG00000007010 I 0.000
ZNF282 Dasypus novemcinctus ENSDNOG00000008361 I 0.000
ZNF398 Gorilla gorilla ENSGGOG00000005812 I 0.000
ZNF282 Homo sapiens ENSG00000170265 D 0.000
ENSSTOG00000021295 Ictidomys tridecemlineatus ENSSTOG00000021295 I 0.000
ZNF282 Macaca mulatta ENSMMUG00000000767 I 0.000
ENSMICG00000016620 Microcebus murinus ENSMICG00000016620 I 0.000
ENSMPUG00000006666 Mustela putorius furo ENSMPUG00000006666 I 0.000
Zfp282 Mus musculus ENSMUSG00000025821 I 0.000
Myotis_brandtii_ZNF282_10025638 Myotis brandtii Myotis_brandtii_ZNF282_10025638 I 0.000
ZNF282 Myotis lucifugus ENSMLUG00000010622 I 0.000
ZNF282 Ochotona princeps ENSOPRG00000010540 I 0.000
ZNF282 Oryctolagus cuniculus ENSOCUG00000008423 I 0.000
ZNF282 Otolemur garnettii ENSOGAG00000030129 I 0.000
ZNF282 Pan troglodytes ENSPTRG00000019841 I 0.000
ENSPANG00000008719 Papio anubis ENSPANG00000008719 I 0.000
ENSPPYG00000018151 Pongo abelii ENSPPYG00000018151 I 0.000
Zfp282 Rattus norvegicus ENSRNOG00000026981 I 0.000
ENSSHAG00000018278 Sarcophilus harrisii ENSSHAG00000018278 I 0.000
ZNF282 Sus scrofa ENSSSCG00000016773 I 0.000
ZNF282 Tupaia belangeri ENSTBEG00000000091 I 0.000
ZNF282 Tursiops truncatus ENSTTRG00000015685 I 0.000