POPTR_0004s16660 (Populus trichocarpa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 POPTR_0004s16660 T222499_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.843 0.755
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.626 0.551
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.602 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.602 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.602 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.602 0.429
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0004s16660.1 Homeodomain 389 440

Links

Other Homeodomain family TFs
Other Populus trichocarpa TFs

1012 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG007530.1 Alligator sinensis Alligator_sinensis_CCG007530.1 N 0.000
Afo_R008094 Aptenodytes forsteri Afo_R008094 N 0.000
Brh_R004789 Buceros rhinoceros Brh_R004789 N 0.000
Aan_R014838 Calypte anna Aan_R014838 N 0.000
ENSGALG00000015459 Gallus gallus ENSGALG00000015459 N 0.000
ENSMGAG00000014439 Meleagris gallopavo ENSMGAG00000014439 N 0.000
ENSPSIG00000000716 Pelodiscus sinensis ENSPSIG00000000716 N 0.000
Tal_R009624 Tyto alba Tal_R009624 N 0.000